Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation

annotate data_manager_conf.xml @ 39:2ab076cf69df draft

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planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
author scottx611x
date Fri, 08 Jul 2016 11:17:50 -0400
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39
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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1 <?xml version="1.0"?>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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2 <data_managers>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
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3
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
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4 <data_manager tool_file="data_manager/gene_annotation_fetcher.xml" id="gene_annotation_fetcher" version="1.0.0">
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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5 <data_table name="gene_annotation">
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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6 <output>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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7 <column name="value" />
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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8 <column name="dbkey" />
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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9 <column name="name" />
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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10 <column name="path" output_ref="out_file">
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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11 <move type="file">
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
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12 <source>${path}</source>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
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13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gene_annotations/${name}</target>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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14 </move>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
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15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gene_annotations/${name}</value_translation>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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16 <value_translation type="function">abspath</value_translation>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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17 </column>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
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18 </output>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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19 </data_table>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
parents:
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20 </data_manager>
2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
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2ab076cf69df planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
scottx611x
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22 </data_managers>