Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation

comparison data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml @ 22:b47ce1c4373e draft

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planemo upload
author scottx611x
date Thu, 23 Jun 2016 15:11:30 -0400
parents 9f718726ed86
children d27c122c2424
comparison
equal deleted inserted replaced
21:096657afd137 22:b47ce1c4373e
14 --name "${database_name}" 14 --name "${database_name}"
15 #end if 15 #end if
16 ]]> 16 ]]>
17 </command> 17 </command>
18 <inputs> 18 <inputs>
19 <param 19 <param help="Enter a unique identifier, or leave blank for an auto-generated uuid" label="Name for this database" name="database_name" type="text" optional="True" />
20 help="Enter a unique identifier, or leave blank for an auto-generated uuid" label="Name for this database" name="database_name" type="text" optional="True" />
21 <param label="Enter URL for gene annotation files" name="gene_annotation_url" type="text" optional="False"/> 20 <param label="Enter URL for gene annotation files" name="gene_annotation_url" type="text" optional="False"/>
22 </inputs> 21 </inputs>
23 <outputs> 22 <outputs>
24 <data format="data_manager_json" name="out_file" /> 23 <data format="data_manager_json" name="out_file" />
25 </outputs> 24 </outputs>
25 <tests>
26 <test>
27 <param name="database_name" value="cool_name"/>
28 <param name="gene_annotation_url" value="http://www.scott-ouellette.com/gene_annotations/chr1-hg19_genes.gtf"/>
29 <output name="out_file" file="chr1-hg19_genes.gtf.data_manager_json"/>
30 </test>
31 </tests>
26 </tool> 32 </tool>