Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation
diff data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml @ 0:0442068f5c91 draft
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author | scottx611x |
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date | Tue, 26 Apr 2016 13:33:16 -0400 |
parents | |
children | 9f718726ed86 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml Tue Apr 26 13:33:16 2016 -0400 @@ -0,0 +1,25 @@ +<?xml version="1.0"?> +<tool id="gene_annotation_fetcher_data_manager" name="Gene Annotation Fetch" tool_type="manage_data" version="1.0.0"> + <description>gene annotation fetcher</description> + <stdio> + <exit_code description="Error" level="fatal" range="1:" /> + </stdio> + <command interpreter="python"> + <![CDATA[ + data_manager.py --out "${out_file}" + #if $gene_annotation_url: + --url "${gene_annotation_url}" + #end if + #if $database_name: + --name "${database_name}" + #end if + ]]> + </command> + <inputs> + <param help="Enter a unique identifier, or leave blank for today's date" label="Name for this database" name="database_name" type="text" optional="True" /> + <param label="Enter URL for gene annotation files" name="gene_annotation_url" type="text" /> + </inputs> + <outputs> + <data format="data_manager_json" name="out_file" /> + </outputs> +</tool>