diff data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml @ 0:0442068f5c91 draft

Uploaded
author scottx611x
date Tue, 26 Apr 2016 13:33:16 -0400
parents
children 9f718726ed86
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml	Tue Apr 26 13:33:16 2016 -0400
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool id="gene_annotation_fetcher_data_manager" name="Gene Annotation Fetch" tool_type="manage_data" version="1.0.0">
+    <description>gene annotation fetcher</description>
+    <stdio>
+        <exit_code description="Error" level="fatal" range="1:" />
+    </stdio>
+    <command interpreter="python">
+    <![CDATA[
+        data_manager.py --out "${out_file}"
+        #if $gene_annotation_url:
+            --url "${gene_annotation_url}"
+        #end if
+        #if $database_name:
+            --name "${database_name}"
+        #end if
+    ]]>
+    </command>
+    <inputs>
+        <param help="Enter a unique identifier, or leave blank for today's date" label="Name for this database" name="database_name" type="text" optional="True" />
+        <param label="Enter URL for gene annotation files" name="gene_annotation_url" type="text" />
+    </inputs>
+    <outputs>
+        <data format="data_manager_json" name="out_file" />
+    </outputs>
+</tool>