Mercurial > repos > shellac > guppy_basecaller

annotate env/lib/python3.7/site-packages/boltons/cacheutils.py @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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1 # -*- coding: utf-8 -*-
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2 """``cacheutils`` contains consistent implementations of fundamental
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3 cache types. Currently there are two to choose from:
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4
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5 * :class:`LRI` - Least-recently inserted
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6 * :class:`LRU` - Least-recently used
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7
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8 Both caches are :class:`dict` subtypes, designed to be as
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9 interchangeable as possible, to facilitate experimentation. A key
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10 practice with performance enhancement with caching is ensuring that
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11 the caching strategy is working. If the cache is constantly missing,
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12 it is just adding more overhead and code complexity. The standard
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13 statistics are:
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14
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15 * ``hit_count`` - the number of times the queried key has been in
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16 the cache
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17 * ``miss_count`` - the number of times a key has been absent and/or
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18 fetched by the cache
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19 * ``soft_miss_count`` - the number of times a key has been absent,
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20 but a default has been provided by the caller, as with
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21 :meth:`dict.get` and :meth:`dict.setdefault`. Soft misses are a
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22 subset of misses, so this number is always less than or equal to
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23 ``miss_count``.
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24
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25 Additionally, ``cacheutils`` provides :class:`ThresholdCounter`, a
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26 cache-like bounded counter useful for online statistics collection.
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27
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28 Learn more about `caching algorithms on Wikipedia
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29 <https://en.wikipedia.org/wiki/Cache_algorithms#Examples>`_.
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30
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31 """
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32
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33 # TODO: TimedLRI
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34 # TODO: support 0 max_size?
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35
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36
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37 import heapq
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38 import weakref
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39 import itertools
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40 from operator import attrgetter
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41
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42 try:
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43 from threading import RLock
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44 except Exception:
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45 class RLock(object):
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46 'Dummy reentrant lock for builds without threads'
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47 def __enter__(self):
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48 pass
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49
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50 def __exit__(self, exctype, excinst, exctb):
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51 pass
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52
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53 try:
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54 from boltons.typeutils import make_sentinel
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55 _MISSING = make_sentinel(var_name='_MISSING')
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56 _KWARG_MARK = make_sentinel(var_name='_KWARG_MARK')
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57 except ImportError:
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58 _MISSING = object()
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59 _KWARG_MARK = object()
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60
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61 try:
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62 xrange
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63 except NameError:
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64 # py3
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65 xrange = range
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66 unicode, str, bytes, basestring = str, bytes, bytes, (str, bytes)
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67
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68 PREV, NEXT, KEY, VALUE = range(4) # names for the link fields
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69 DEFAULT_MAX_SIZE = 128
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70
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71
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72 class LRI(dict):
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73 """The ``LRI`` implements the basic *Least Recently Inserted* strategy to
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74 caching. One could also think of this as a ``SizeLimitedDefaultDict``.
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75
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76 *on_miss* is a callable that accepts the missing key (as opposed
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77 to :class:`collections.defaultdict`'s "default_factory", which
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78 accepts no arguments.) Also note that, like the :class:`LRI`,
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79 the ``LRI`` is instrumented with statistics tracking.
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80
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81 >>> cap_cache = LRI(max_size=2)
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82 >>> cap_cache['a'], cap_cache['b'] = 'A', 'B'
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83 >>> from pprint import pprint as pp
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84 >>> pp(dict(cap_cache))
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85 {'a': 'A', 'b': 'B'}
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86 >>> [cap_cache['b'] for i in range(3)][0]
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87 'B'
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88 >>> cap_cache['c'] = 'C'
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89 >>> print(cap_cache.get('a'))
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90 None
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91 >>> cap_cache.hit_count, cap_cache.miss_count, cap_cache.soft_miss_count
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92 (3, 1, 1)
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93 """
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94 def __init__(self, max_size=DEFAULT_MAX_SIZE, values=None,
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95 on_miss=None):
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96 if max_size <= 0:
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97 raise ValueError('expected max_size > 0, not %r' % max_size)
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98 self.hit_count = self.miss_count = self.soft_miss_count = 0
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99 self.max_size = max_size
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100 self._lock = RLock()
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101 self._init_ll()
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102
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103 if on_miss is not None and not callable(on_miss):
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104 raise TypeError('expected on_miss to be a callable'
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105 ' (or None), not %r' % on_miss)
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106 self.on_miss = on_miss
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107
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108 if values:
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109 self.update(values)
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110
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111 # TODO: fromkeys()?
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112
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113 # linked list manipulation methods.
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114 #
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115 # invariants:
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116 # 1) 'anchor' is the sentinel node in the doubly linked list. there is
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117 # always only one, and its KEY and VALUE are both _MISSING.
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118 # 2) the most recently accessed node comes immediately before 'anchor'.
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119 # 3) the least recently accessed node comes immediately after 'anchor'.
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120 def _init_ll(self):
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121 anchor = []
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122 anchor[:] = [anchor, anchor, _MISSING, _MISSING]
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123 # a link lookup table for finding linked list links in O(1)
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124 # time.
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125 self._link_lookup = {}
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126 self._anchor = anchor
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shellac
parents:
diff changeset
127
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
128 def _print_ll(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
129 print('***')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
130 for (key, val) in self._get_flattened_ll():
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
131 print(key, val)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
132 print('***')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
133 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
134
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
135 def _get_flattened_ll(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
136 flattened_list = []
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
137 link = self._anchor
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
138 while True:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
139 flattened_list.append((link[KEY], link[VALUE]))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
140 link = link[NEXT]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
141 if link is self._anchor:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
142 break
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
143 return flattened_list
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
144
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
145 def _get_link_and_move_to_front_of_ll(self, key):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
146 # find what will become the newest link. this may raise a
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
147 # KeyError, which is useful to __getitem__ and __setitem__
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
148 newest = self._link_lookup[key]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
149
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
150 # splice out what will become the newest link.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
151 newest[PREV][NEXT] = newest[NEXT]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
152 newest[NEXT][PREV] = newest[PREV]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
153
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
154 # move what will become the newest link immediately before
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
155 # anchor (invariant 2)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
156 anchor = self._anchor
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
157 second_newest = anchor[PREV]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
158 second_newest[NEXT] = anchor[PREV] = newest
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
159 newest[PREV] = second_newest
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
160 newest[NEXT] = anchor
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
161 return newest
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
162
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
163 def _set_key_and_add_to_front_of_ll(self, key, value):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
164 # create a new link and place it immediately before anchor
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
165 # (invariant 2).
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
166 anchor = self._anchor
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
167 second_newest = anchor[PREV]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
168 newest = [second_newest, anchor, key, value]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
169 second_newest[NEXT] = anchor[PREV] = newest
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
170 self._link_lookup[key] = newest
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
171
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
172 def _set_key_and_evict_last_in_ll(self, key, value):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
173 # the link after anchor is the oldest in the linked list
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
174 # (invariant 3). the current anchor becomes a link that holds
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
175 # the newest key, and the oldest link becomes the new anchor
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
176 # (invariant 1). now the newest link comes before anchor
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
177 # (invariant 2). no links are moved; only their keys
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
178 # and values are changed.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
179 oldanchor = self._anchor
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
180 oldanchor[KEY] = key
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
181 oldanchor[VALUE] = value
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
182
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
183 self._anchor = anchor = oldanchor[NEXT]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
184 evicted = anchor[KEY]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
185 anchor[KEY] = anchor[VALUE] = _MISSING
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
186 del self._link_lookup[evicted]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
187 self._link_lookup[key] = oldanchor
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
188 return evicted
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
189
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
190 def _remove_from_ll(self, key):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
191 # splice a link out of the list and drop it from our lookup
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
192 # table.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
193 link = self._link_lookup.pop(key)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
194 link[PREV][NEXT] = link[NEXT]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
195 link[NEXT][PREV] = link[PREV]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
196
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
197 def __setitem__(self, key, value):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
198 with self._lock:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
199 try:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
200 link = self._get_link_and_move_to_front_of_ll(key)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
201 except KeyError:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
202 if len(self) < self.max_size:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
203 self._set_key_and_add_to_front_of_ll(key, value)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
204 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
205 evicted = self._set_key_and_evict_last_in_ll(key, value)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
206 super(LRI, self).__delitem__(evicted)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
207 super(LRI, self).__setitem__(key, value)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
208 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
209 link[VALUE] = value
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
210
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
211 def __getitem__(self, key):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
212 with self._lock:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
213 try:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
214 link = self._link_lookup[key]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
215 except KeyError:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
216 self.miss_count += 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
217 if not self.on_miss:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
218 raise
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
219 ret = self[key] = self.on_miss(key)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
220 return ret
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
221
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
222 self.hit_count += 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
223 return link[VALUE]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
224
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
225 def get(self, key, default=None):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
226 try:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
227 return self[key]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
228 except KeyError:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
229 self.soft_miss_count += 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
230 return default
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
231
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
232 def __delitem__(self, key):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
233 with self._lock:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
234 super(LRI, self).__delitem__(key)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
235 self._remove_from_ll(key)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
236
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
237 def pop(self, key, default=_MISSING):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
238 # NB: hit/miss counts are bypassed for pop()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
239 with self._lock:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
240 try:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
241 ret = super(LRI, self).pop(key)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
242 except KeyError:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
243 if default is _MISSING:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
244 raise
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
245 ret = default
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
246 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
247 self._remove_from_ll(key)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
248 return ret
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
249
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
250 def popitem(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
251 with self._lock:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
252 item = super(LRI, self).popitem()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
253 self._remove_from_ll(item[0])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
254 return item
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
255
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
256 def clear(self):
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257 with self._lock:
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258 super(LRI, self).clear()
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259 self._init_ll()
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260
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261 def copy(self):
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262 return self.__class__(max_size=self.max_size, values=self)
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263
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264 def setdefault(self, key, default=None):
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265 with self._lock:
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266 try:
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267 return self[key]
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268 except KeyError:
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269 self.soft_miss_count += 1
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270 self[key] = default
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271 return default
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272
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273 def update(self, E, **F):
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274 # E and F are throwback names to the dict() __doc__
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275 with self._lock:
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276 if E is self:
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277 return
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278 setitem = self.__setitem__
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279 if callable(getattr(E, 'keys', None)):
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280 for k in E.keys():
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281 setitem(k, E[k])
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282 else:
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283 for k, v in E:
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284 setitem(k, v)
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285 for k in F:
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286 setitem(k, F[k])
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287 return
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288
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289 def __eq__(self, other):
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290 with self._lock:
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291 if self is other:
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292 return True
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293 if len(other) != len(self):
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294 return False
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295 if not isinstance(other, LRI):
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296 return other == self
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297 return super(LRI, self).__eq__(other)
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298
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299 def __ne__(self, other):
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300 return not (self == other)
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301
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302 def __repr__(self):
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303 cn = self.__class__.__name__
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304 val_map = super(LRI, self).__repr__()
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305 return ('%s(max_size=%r, on_miss=%r, values=%s)'
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306 % (cn, self.max_size, self.on_miss, val_map))
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307
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308
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309 class LRU(LRI):
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310 """The ``LRU`` is :class:`dict` subtype implementation of the
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311 *Least-Recently Used* caching strategy.
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312
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313 Args:
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314 max_size (int): Max number of items to cache. Defaults to ``128``.
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315 values (iterable): Initial values for the cache. Defaults to ``None``.
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316 on_miss (callable): a callable which accepts a single argument, the
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317 key not present in the cache, and returns the value to be cached.
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318
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319 >>> cap_cache = LRU(max_size=2)
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320 >>> cap_cache['a'], cap_cache['b'] = 'A', 'B'
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321 >>> from pprint import pprint as pp
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322 >>> pp(dict(cap_cache))
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323 {'a': 'A', 'b': 'B'}
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324 >>> [cap_cache['b'] for i in range(3)][0]
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325 'B'
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326 >>> cap_cache['c'] = 'C'
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327 >>> print(cap_cache.get('a'))
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328 None
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329
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330 This cache is also instrumented with statistics
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331 collection. ``hit_count``, ``miss_count``, and ``soft_miss_count``
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332 are all integer members that can be used to introspect the
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333 performance of the cache. ("Soft" misses are misses that did not
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334 raise :exc:`KeyError`, e.g., ``LRU.get()`` or ``on_miss`` was used to
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335 cache a default.
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336
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337 >>> cap_cache.hit_count, cap_cache.miss_count, cap_cache.soft_miss_count
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338 (3, 1, 1)
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339
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340 Other than the size-limiting caching behavior and statistics,
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341 ``LRU`` acts like its parent class, the built-in Python :class:`dict`.
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342 """
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343 def __getitem__(self, key):
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344 with self._lock:
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345 try:
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346 link = self._get_link_and_move_to_front_of_ll(key)
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347 except KeyError:
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348 self.miss_count += 1
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349 if not self.on_miss:
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350 raise
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351 ret = self[key] = self.on_miss(key)
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352 return ret
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353
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354 self.hit_count += 1
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355 return link[VALUE]
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356
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357
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358 ### Cached decorator
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359 # Key-making technique adapted from Python 3.4's functools
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360
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361 class _HashedKey(list):
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362 """The _HashedKey guarantees that hash() will be called no more than once
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363 per cached function invocation.
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364 """
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365 __slots__ = 'hash_value'
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366
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367 def __init__(self, key):
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368 self[:] = key
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369 self.hash_value = hash(tuple(key))
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370
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371 def __hash__(self):
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372 return self.hash_value
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373
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374 def __repr__(self):
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375 return '%s(%s)' % (self.__class__.__name__, list.__repr__(self))
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376
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377
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378 def make_cache_key(args, kwargs, typed=False,
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379 kwarg_mark=_KWARG_MARK,
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380 fasttypes=frozenset([int, str, frozenset, type(None)])):
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381 """Make a generic key from a function's positional and keyword
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382 arguments, suitable for use in caches. Arguments within *args* and
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383 *kwargs* must be `hashable`_. If *typed* is ``True``, ``3`` and
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384 ``3.0`` will be treated as separate keys.
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385
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386 The key is constructed in a way that is flat as possible rather than
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387 as a nested structure that would take more memory.
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388
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389 If there is only a single argument and its data type is known to cache
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390 its hash value, then that argument is returned without a wrapper. This
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391 saves space and improves lookup speed.
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392
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393 >>> tuple(make_cache_key(('a', 'b'), {'c': ('d')}))
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394 ('a', 'b', _KWARG_MARK, ('c', 'd'))
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395
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396 .. _hashable: https://docs.python.org/2/glossary.html#term-hashable
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397 """
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398
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399 # key = [func_name] if func_name else []
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400 # key.extend(args)
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401 key = list(args)
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402 if kwargs:
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403 sorted_items = sorted(kwargs.items())
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404 key.append(kwarg_mark)
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405 key.extend(sorted_items)
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406 if typed:
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407 key.extend([type(v) for v in args])
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408 if kwargs:
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409 key.extend([type(v) for k, v in sorted_items])
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410 elif len(key) == 1 and type(key[0]) in fasttypes:
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411 return key[0]
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412 return _HashedKey(key)
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413
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414 # for backwards compatibility in case someone was importing it
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415 _make_cache_key = make_cache_key
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416
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417
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418 class CachedFunction(object):
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419 """This type is used by :func:`cached`, below. Instances of this
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420 class are used to wrap functions in caching logic.
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421 """
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422 def __init__(self, func, cache, scoped=True, typed=False, key=None):
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423 self.func = func
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424 if callable(cache):
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425 self.get_cache = cache
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426 elif not (callable(getattr(cache, '__getitem__', None))
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427 and callable(getattr(cache, '__setitem__', None))):
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428 raise TypeError('expected cache to be a dict-like object,'
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429 ' or callable returning a dict-like object, not %r'
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430 % cache)
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431 else:
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432 def _get_cache():
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433 return cache
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434 self.get_cache = _get_cache
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435 self.scoped = scoped
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436 self.typed = typed
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437 self.key_func = key or make_cache_key
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438
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439 def __call__(self, *args, **kwargs):
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440 cache = self.get_cache()
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441 key = self.key_func(args, kwargs, typed=self.typed)
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442 try:
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443 ret = cache[key]
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444 except KeyError:
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445 ret = cache[key] = self.func(*args, **kwargs)
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446 return ret
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447
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448 def __repr__(self):
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449 cn = self.__class__.__name__
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450 if self.typed or not self.scoped:
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451 return ("%s(func=%r, scoped=%r, typed=%r)"
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452 % (cn, self.func, self.scoped, self.typed))
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453 return "%s(func=%r)" % (cn, self.func)
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454
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455
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456 class CachedMethod(object):
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457 """Similar to :class:`CachedFunction`, this type is used by
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458 :func:`cachedmethod` to wrap methods in caching logic.
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459 """
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460 def __init__(self, func, cache, scoped=True, typed=False, key=None):
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461 self.func = func
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462 self.__isabstractmethod__ = getattr(func, '__isabstractmethod__', False)
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463 if isinstance(cache, basestring):
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464 self.get_cache = attrgetter(cache)
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465 elif callable(cache):
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466 self.get_cache = cache
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467 elif not (callable(getattr(cache, '__getitem__', None))
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468 and callable(getattr(cache, '__setitem__', None))):
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469 raise TypeError('expected cache to be an attribute name,'
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470 ' dict-like object, or callable returning'
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471 ' a dict-like object, not %r' % cache)
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472 else:
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473 def _get_cache(obj):
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474 return cache
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475 self.get_cache = _get_cache
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476 self.scoped = scoped
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477 self.typed = typed
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478 self.key_func = key or make_cache_key
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479 self.bound_to = None
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480
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481 def __get__(self, obj, objtype=None):
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482 if obj is None:
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483 return self
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484 cls = self.__class__
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485 ret = cls(self.func, self.get_cache, typed=self.typed,
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486 scoped=self.scoped, key=self.key_func)
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487 ret.bound_to = obj
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488 return ret
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489
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490 def __call__(self, *args, **kwargs):
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491 obj = args[0] if self.bound_to is None else self.bound_to
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492 cache = self.get_cache(obj)
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493 key_args = (self.bound_to, self.func) + args if self.scoped else args
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494 key = self.key_func(key_args, kwargs, typed=self.typed)
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495 try:
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496 ret = cache[key]
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497 except KeyError:
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498 if self.bound_to is not None:
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499 args = (self.bound_to,) + args
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500 ret = cache[key] = self.func(*args, **kwargs)
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501 return ret
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502
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503 def __repr__(self):
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504 cn = self.__class__.__name__
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505 args = (cn, self.func, self.scoped, self.typed)
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506 if self.bound_to is not None:
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507 args += (self.bound_to,)
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508 return ('<%s func=%r scoped=%r typed=%r bound_to=%r>' % args)
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509 return ("%s(func=%r, scoped=%r, typed=%r)" % args)
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510
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511
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512 def cached(cache, scoped=True, typed=False, key=None):
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513 """Cache any function with the cache object of your choosing. Note
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514 that the function wrapped should take only `hashable`_ arguments.
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515
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516 Args:
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517 cache (Mapping): Any :class:`dict`-like object suitable for
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518 use as a cache. Instances of the :class:`LRU` and
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519 :class:`LRI` are good choices, but a plain :class:`dict`
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520 can work in some cases, as well. This argument can also be
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521 a callable which accepts no arguments and returns a mapping.
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522 scoped (bool): Whether the function itself is part of the
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523 cache key. ``True`` by default, different functions will
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524 not read one another's cache entries, but can evict one
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525 another's results. ``False`` can be useful for certain
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526 shared cache use cases. More advanced behavior can be
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527 produced through the *key* argument.
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528 typed (bool): Whether to factor argument types into the cache
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529 check. Default ``False``, setting to ``True`` causes the
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530 cache keys for ``3`` and ``3.0`` to be considered unequal.
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531
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532 >>> my_cache = LRU()
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533 >>> @cached(my_cache)
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534 ... def cached_lower(x):
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535 ... return x.lower()
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536 ...
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537 >>> cached_lower("CaChInG's FuN AgAiN!")
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538 "caching's fun again!"
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539 >>> len(my_cache)
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540 1
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541
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542 .. _hashable: https://docs.python.org/2/glossary.html#term-hashable
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543
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544 """
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545 def cached_func_decorator(func):
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546 return CachedFunction(func, cache, scoped=scoped, typed=typed, key=key)
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547 return cached_func_decorator
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548
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549
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550 def cachedmethod(cache, scoped=True, typed=False, key=None):
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551 """Similar to :func:`cached`, ``cachedmethod`` is used to cache
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552 methods based on their arguments, using any :class:`dict`-like
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553 *cache* object.
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554
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555 Args:
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556 cache (str/Mapping/callable): Can be the name of an attribute
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557 on the instance, any Mapping/:class:`dict`-like object, or
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558 a callable which returns a Mapping.
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559 scoped (bool): Whether the method itself and the object it is
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560 bound to are part of the cache keys. ``True`` by default,
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561 different methods will not read one another's cache
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562 results. ``False`` can be useful for certain shared cache
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563 use cases. More advanced behavior can be produced through
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564 the *key* arguments.
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565 typed (bool): Whether to factor argument types into the cache
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566 check. Default ``False``, setting to ``True`` causes the
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567 cache keys for ``3`` and ``3.0`` to be considered unequal.
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568 key (callable): A callable with a signature that matches
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569 :func:`make_cache_key` that returns a tuple of hashable
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570 values to be used as the key in the cache.
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571
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572 >>> class Lowerer(object):
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573 ... def __init__(self):
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574 ... self.cache = LRI()
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575 ...
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576 ... @cachedmethod('cache')
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577 ... def lower(self, text):
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578 ... return text.lower()
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579 ...
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580 >>> lowerer = Lowerer()
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581 >>> lowerer.lower('WOW WHO COULD GUESS CACHING COULD BE SO NEAT')
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582 'wow who could guess caching could be so neat'
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583 >>> len(lowerer.cache)
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584 1
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585
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586 """
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587 def cached_method_decorator(func):
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588 return CachedMethod(func, cache, scoped=scoped, typed=typed, key=key)
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589 return cached_method_decorator
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590
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591
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592 class cachedproperty(object):
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593 """The ``cachedproperty`` is used similar to :class:`property`, except
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594 that the wrapped method is only called once. This is commonly used
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595 to implement lazy attributes.
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596
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597 After the property has been accessed, the value is stored on the
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598 instance itself, using the same name as the cachedproperty. This
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599 allows the cache to be cleared with :func:`delattr`, or through
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600 manipulating the object's ``__dict__``.
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601 """
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602 def __init__(self, func):
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603 self.__doc__ = getattr(func, '__doc__')
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604 self.__isabstractmethod__ = getattr(func, '__isabstractmethod__', False)
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605 self.func = func
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606
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607 def __get__(self, obj, objtype=None):
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608 if obj is None:
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609 return self
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610 value = obj.__dict__[self.func.__name__] = self.func(obj)
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611 return value
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612
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613 def __repr__(self):
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614 cn = self.__class__.__name__
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615 return '<%s func=%s>' % (cn, self.func)
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616
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617
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618 class ThresholdCounter(object):
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619 """A **bounded** dict-like Mapping from keys to counts. The
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620 ThresholdCounter automatically compacts after every (1 /
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621 *threshold*) additions, maintaining exact counts for any keys
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622 whose count represents at least a *threshold* ratio of the total
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623 data. In other words, if a particular key is not present in the
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624 ThresholdCounter, its count represents less than *threshold* of
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625 the total data.
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626
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627 >>> tc = ThresholdCounter(threshold=0.1)
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628 >>> tc.add(1)
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629 >>> tc.items()
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630 [(1, 1)]
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631 >>> tc.update([2] * 10)
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632 >>> tc.get(1)
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633 0
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634 >>> tc.add(5)
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635 >>> 5 in tc
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636 True
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637 >>> len(list(tc.elements()))
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638 11
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639
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640 As you can see above, the API is kept similar to
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
641 :class:`collections.Counter`. The most notable feature omissions
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
642 being that counted items cannot be set directly, uncounted, or
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
643 removed, as this would disrupt the math.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
644
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
645 Use the ThresholdCounter when you need best-effort long-lived
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
646 counts for dynamically-keyed data. Without a bounded datastructure
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
647 such as this one, the dynamic keys often represent a memory leak
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
648 and can impact application reliability. The ThresholdCounter's
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
649 item replacement strategy is fully deterministic and can be
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
650 thought of as *Amortized Least Relevant*. The absolute upper bound
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
651 of keys it will store is *(2/threshold)*, but realistically
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
652 *(1/threshold)* is expected for uniformly random datastreams, and
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
653 one or two orders of magnitude better for real-world data.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
654
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
655 This algorithm is an implementation of the Lossy Counting
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
656 algorithm described in "Approximate Frequency Counts over Data
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
657 Streams" by Manku & Motwani. Hat tip to Kurt Rose for discovery
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
658 and initial implementation.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
659
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
660 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
661 # TODO: hit_count/miss_count?
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
662 def __init__(self, threshold=0.001):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
663 if not 0 < threshold < 1:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
664 raise ValueError('expected threshold between 0 and 1, not: %r'
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
665 % threshold)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
666
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
667 self.total = 0
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
668 self._count_map = {}
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
669 self._threshold = threshold
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parents:
diff changeset
670 self._thresh_count = int(1 / threshold)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
671 self._cur_bucket = 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
672
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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diff changeset
673 @property
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parents:
diff changeset
674 def threshold(self):
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parents:
diff changeset
675 return self._threshold
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parents:
diff changeset
676
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parents:
diff changeset
677 def add(self, key):
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parents:
diff changeset
678 """Increment the count of *key* by 1, automatically adding it if it
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
679 does not exist.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
680
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
681 Cache compaction is triggered every *1/threshold* additions.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
682 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
683 self.total += 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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diff changeset
684 try:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
685 self._count_map[key][0] += 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
686 except KeyError:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
687 self._count_map[key] = [1, self._cur_bucket - 1]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
688
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
689 if self.total % self._thresh_count == 0:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
690 self._count_map = dict([(k, v) for k, v in self._count_map.items()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
691 if sum(v) > self._cur_bucket])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
692 self._cur_bucket += 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
693 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
694
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
695 def elements(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
696 """Return an iterator of all the common elements tracked by the
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
697 counter. Yields each key as many times as it has been seen.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
698 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
699 repeaters = itertools.starmap(itertools.repeat, self.iteritems())
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
700 return itertools.chain.from_iterable(repeaters)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
701
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
702 def most_common(self, n=None):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
703 """Get the top *n* keys and counts as tuples. If *n* is omitted,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
704 returns all the pairs.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
705 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
706 if n <= 0:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
707 return []
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
708 ret = sorted(self.iteritems(), key=lambda x: x[1], reverse=True)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
709 if n is None or n >= len(ret):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
710 return ret
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
711 return ret[:n]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
712
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
713 def get_common_count(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
714 """Get the sum of counts for keys exceeding the configured data
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
715 threshold.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
716 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
717 return sum([count for count, _ in self._count_map.values()])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
718
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
719 def get_uncommon_count(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
720 """Get the sum of counts for keys that were culled because the
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
721 associated counts represented less than the configured
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
722 threshold. The long-tail counts.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
723 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
724 return self.total - self.get_common_count()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
725
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
726 def get_commonality(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
727 """Get a float representation of the effective count accuracy. The
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
728 higher the number, the less uniform the keys being added, and
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
729 the higher accuracy and efficiency of the ThresholdCounter.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
730
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
731 If a stronger measure of data cardinality is required,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
732 consider using hyperloglog.
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
733 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
734 return float(self.get_common_count()) / self.total
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
735
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
736 def __getitem__(self, key):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
737 return self._count_map[key][0]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
738
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
739 def __len__(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
740 return len(self._count_map)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
741
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
742 def __contains__(self, key):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
743 return key in self._count_map
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
744
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
745 def iterkeys(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
746 return iter(self._count_map)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
747
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
748 def keys(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
749 return list(self.iterkeys())
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
750
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
751 def itervalues(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
752 count_map = self._count_map
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
753 for k in count_map:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
754 yield count_map[k][0]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
755
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
756 def values(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
757 return list(self.itervalues())
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
758
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
759 def iteritems(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
760 count_map = self._count_map
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
761 for k in count_map:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
762 yield (k, count_map[k][0])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
763
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
764 def items(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
765 return list(self.iteritems())
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
766
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
767 def get(self, key, default=0):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
768 "Get count for *key*, defaulting to 0."
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
769 try:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
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770 return self[key]
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771 except KeyError:
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772 return default
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773
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774 def update(self, iterable, **kwargs):
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775 """Like dict.update() but add counts instead of replacing them, used
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776 to add multiple items in one call.
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777
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778 Source can be an iterable of keys to add, or a mapping of keys
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779 to integer counts.
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780 """
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781 if iterable is not None:
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782 if callable(getattr(iterable, 'iteritems', None)):
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783 for key, count in iterable.iteritems():
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784 for i in xrange(count):
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785 self.add(key)
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786 else:
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787 for key in iterable:
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788 self.add(key)
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789 if kwargs:
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790 self.update(kwargs)
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791
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792
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793 class MinIDMap(object):
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794 """
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795 Assigns arbitrary weakref-able objects the smallest possible unique
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796 integer IDs, such that no two objects have the same ID at the same
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797 time.
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798
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799 Maps arbitrary hashable objects to IDs.
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800
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801 Based on https://gist.github.com/kurtbrose/25b48114de216a5e55df
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802 """
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803 def __init__(self):
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804 self.mapping = weakref.WeakKeyDictionary()
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805 self.ref_map = {}
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806 self.free = []
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807
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808 def get(self, a):
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809 try:
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810 return self.mapping[a][0] # if object is mapped, return ID
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811 except KeyError:
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812 pass
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813
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814 if self.free: # if there are any free IDs, use the smallest
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815 nxt = heapq.heappop(self.free)
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816 else: # if there are no free numbers, use the next highest ID
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817 nxt = len(self.mapping)
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818 ref = weakref.ref(a, self._clean)
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819 self.mapping[a] = (nxt, ref)
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820 self.ref_map[ref] = nxt
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821 return nxt
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822
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823 def drop(self, a):
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824 freed, ref = self.mapping[a]
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825 del self.mapping[a]
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826 del self.ref_map[ref]
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827 heapq.heappush(self.free, freed)
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828
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829 def _clean(self, ref):
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830 print(self.ref_map[ref])
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831 heapq.heappush(self.free, self.ref_map[ref])
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832 del self.ref_map[ref]
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833
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834 def __contains__(self, a):
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835 return a in self.mapping
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836
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837 def __iter__(self):
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838 return iter(self.mapping)
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839
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840 def __len__(self):
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841 return self.mapping.__len__()
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842
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843 def iteritems(self):
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844 return iter((k, self.mapping[k][0]) for k in iter(self.mapping))
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845
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846
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847 # end cacheutils.py