Mercurial > repos > shellac > guppy_basecaller
annotate env/lib/python3.7/site-packages/boto/pyami/scriptbase.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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1 import os |
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2 import sys |
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3 from boto.utils import ShellCommand, get_ts |
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4 import boto |
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5 import boto.utils |
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6 |
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7 class ScriptBase(object): |
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8 |
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9 def __init__(self, config_file=None): |
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10 self.instance_id = boto.config.get('Instance', 'instance-id', 'default') |
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11 self.name = self.__class__.__name__ |
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12 self.ts = get_ts() |
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13 if config_file: |
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14 boto.config.read(config_file) |
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15 |
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16 def notify(self, subject, body=''): |
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17 boto.utils.notify(subject, body) |
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18 |
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19 def mkdir(self, path): |
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20 if not os.path.isdir(path): |
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21 try: |
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22 os.mkdir(path) |
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23 except: |
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24 boto.log.error('Error creating directory: %s' % path) |
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25 |
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26 def umount(self, path): |
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27 if os.path.ismount(path): |
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28 self.run('umount %s' % path) |
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29 |
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30 def run(self, command, notify=True, exit_on_error=False, cwd=None): |
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31 self.last_command = ShellCommand(command, cwd=cwd) |
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32 if self.last_command.status != 0: |
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33 boto.log.error('Error running command: "%s". Output: "%s"' % (command, self.last_command.output)) |
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34 if notify: |
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35 self.notify('Error encountered', |
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36 'Error running the following command:\n\t%s\n\nCommand output:\n\t%s' % \ |
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37 (command, self.last_command.output)) |
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38 if exit_on_error: |
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39 sys.exit(-1) |
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40 return self.last_command.status |
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41 |
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42 def main(self): |
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43 pass |