Mercurial > repos > shellac > guppy_basecaller
annotate env/lib/python3.7/site-packages/docutils/parsers/rst/tableparser.py @ 0:26e78fe6e8c4 draft
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author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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1 # $Id: tableparser.py 8373 2019-08-27 12:11:30Z milde $ |
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2 # Author: David Goodger <goodger@python.org> |
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3 # Copyright: This module has been placed in the public domain. |
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4 |
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5 """ |
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6 This module defines table parser classes,which parse plaintext-graphic tables |
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7 and produce a well-formed data structure suitable for building a CALS table. |
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8 |
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9 :Classes: |
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10 - `GridTableParser`: Parse fully-formed tables represented with a grid. |
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11 - `SimpleTableParser`: Parse simple tables, delimited by top & bottom |
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12 borders. |
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13 |
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14 :Exception class: `TableMarkupError` |
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15 |
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16 :Function: |
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17 `update_dict_of_lists()`: Merge two dictionaries containing list values. |
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18 """ |
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19 |
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20 __docformat__ = 'reStructuredText' |
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21 |
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22 |
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23 import re |
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24 import sys |
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25 from docutils import DataError |
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26 from docutils.utils import strip_combining_chars |
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27 |
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28 |
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29 class TableMarkupError(DataError): |
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30 |
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31 """ |
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32 Raise if there is any problem with table markup. |
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33 |
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34 The keyword argument `offset` denotes the offset of the problem |
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35 from the table's start line. |
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36 """ |
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37 |
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38 def __init__(self, *args, **kwargs): |
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39 self.offset = kwargs.pop('offset', 0) |
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40 DataError.__init__(self, *args) |
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41 |
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42 |
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43 class TableParser(object): |
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44 |
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45 """ |
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46 Abstract superclass for the common parts of the syntax-specific parsers. |
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47 """ |
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48 |
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49 head_body_separator_pat = None |
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50 """Matches the row separator between head rows and body rows.""" |
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51 |
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52 double_width_pad_char = '\x00' |
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53 """Padding character for East Asian double-width text.""" |
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54 |
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55 def parse(self, block): |
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56 """ |
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57 Analyze the text `block` and return a table data structure. |
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58 |
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59 Given a plaintext-graphic table in `block` (list of lines of text; no |
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60 whitespace padding), parse the table, construct and return the data |
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61 necessary to construct a CALS table or equivalent. |
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62 |
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63 Raise `TableMarkupError` if there is any problem with the markup. |
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64 """ |
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65 self.setup(block) |
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66 self.find_head_body_sep() |
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67 self.parse_table() |
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68 structure = self.structure_from_cells() |
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69 return structure |
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70 |
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71 def find_head_body_sep(self): |
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72 """Look for a head/body row separator line; store the line index.""" |
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73 for i in range(len(self.block)): |
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74 line = self.block[i] |
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75 if self.head_body_separator_pat.match(line): |
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76 if self.head_body_sep: |
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77 raise TableMarkupError( |
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78 'Multiple head/body row separators ' |
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79 '(table lines %s and %s); only one allowed.' |
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80 % (self.head_body_sep+1, i+1), offset=i) |
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81 else: |
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82 self.head_body_sep = i |
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83 self.block[i] = line.replace('=', '-') |
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84 if self.head_body_sep == 0 or self.head_body_sep == (len(self.block) |
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85 - 1): |
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86 raise TableMarkupError('The head/body row separator may not be ' |
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87 'the first or last line of the table.', |
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88 offset=i) |
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89 |
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90 |
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91 class GridTableParser(TableParser): |
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92 |
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93 """ |
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94 Parse a grid table using `parse()`. |
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95 |
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96 Here's an example of a grid table:: |
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97 |
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98 +------------------------+------------+----------+----------+ |
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99 | Header row, column 1 | Header 2 | Header 3 | Header 4 | |
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100 +========================+============+==========+==========+ |
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101 | body row 1, column 1 | column 2 | column 3 | column 4 | |
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102 +------------------------+------------+----------+----------+ |
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103 | body row 2 | Cells may span columns. | |
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104 +------------------------+------------+---------------------+ |
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105 | body row 3 | Cells may | - Table cells | |
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106 +------------------------+ span rows. | - contain | |
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107 | body row 4 | | - body elements. | |
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108 +------------------------+------------+---------------------+ |
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109 |
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110 Intersections use '+', row separators use '-' (except for one optional |
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111 head/body row separator, which uses '='), and column separators use '|'. |
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112 |
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113 Passing the above table to the `parse()` method will result in the |
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114 following data structure:: |
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115 |
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116 ([24, 12, 10, 10], |
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117 [[(0, 0, 1, ['Header row, column 1']), |
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118 (0, 0, 1, ['Header 2']), |
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119 (0, 0, 1, ['Header 3']), |
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120 (0, 0, 1, ['Header 4'])]], |
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121 [[(0, 0, 3, ['body row 1, column 1']), |
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122 (0, 0, 3, ['column 2']), |
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123 (0, 0, 3, ['column 3']), |
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124 (0, 0, 3, ['column 4'])], |
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125 [(0, 0, 5, ['body row 2']), |
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126 (0, 2, 5, ['Cells may span columns.']), |
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127 None, |
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128 None], |
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129 [(0, 0, 7, ['body row 3']), |
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130 (1, 0, 7, ['Cells may', 'span rows.', '']), |
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131 (1, 1, 7, ['- Table cells', '- contain', '- body elements.']), |
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132 None], |
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133 [(0, 0, 9, ['body row 4']), None, None, None]]) |
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134 |
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135 The first item is a list containing column widths (colspecs). The second |
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136 item is a list of head rows, and the third is a list of body rows. Each |
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137 row contains a list of cells. Each cell is either None (for a cell unused |
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138 because of another cell's span), or a tuple. A cell tuple contains four |
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139 items: the number of extra rows used by the cell in a vertical span |
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140 (morerows); the number of extra columns used by the cell in a horizontal |
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141 span (morecols); the line offset of the first line of the cell contents; |
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142 and the cell contents, a list of lines of text. |
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143 """ |
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144 |
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145 head_body_separator_pat = re.compile(r'\+=[=+]+=\+ *$') |
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146 |
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147 def setup(self, block): |
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148 self.block = block[:] # make a copy; it may be modified |
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149 self.block.disconnect() # don't propagate changes to parent |
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150 self.bottom = len(block) - 1 |
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151 self.right = len(block[0]) - 1 |
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152 self.head_body_sep = None |
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153 self.done = [-1] * len(block[0]) |
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154 self.cells = [] |
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155 self.rowseps = {0: [0]} |
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156 self.colseps = {0: [0]} |
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157 |
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158 def parse_table(self): |
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159 """ |
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160 Start with a queue of upper-left corners, containing the upper-left |
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161 corner of the table itself. Trace out one rectangular cell, remember |
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162 it, and add its upper-right and lower-left corners to the queue of |
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163 potential upper-left corners of further cells. Process the queue in |
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164 top-to-bottom order, keeping track of how much of each text column has |
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165 been seen. |
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166 |
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167 We'll end up knowing all the row and column boundaries, cell positions |
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168 and their dimensions. |
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169 """ |
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170 corners = [(0, 0)] |
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171 while corners: |
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172 top, left = corners.pop(0) |
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173 if top == self.bottom or left == self.right \ |
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174 or top <= self.done[left]: |
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175 continue |
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176 result = self.scan_cell(top, left) |
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177 if not result: |
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178 continue |
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179 bottom, right, rowseps, colseps = result |
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180 update_dict_of_lists(self.rowseps, rowseps) |
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181 update_dict_of_lists(self.colseps, colseps) |
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182 self.mark_done(top, left, bottom, right) |
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183 cellblock = self.block.get_2D_block(top + 1, left + 1, |
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184 bottom, right) |
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185 cellblock.disconnect() # lines in cell can't sync with parent |
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186 cellblock.replace(self.double_width_pad_char, '') |
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187 self.cells.append((top, left, bottom, right, cellblock)) |
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188 corners.extend([(top, right), (bottom, left)]) |
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189 corners.sort() |
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190 if not self.check_parse_complete(): |
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191 raise TableMarkupError('Malformed table; parse incomplete.') |
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192 |
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193 def mark_done(self, top, left, bottom, right): |
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194 """For keeping track of how much of each text column has been seen.""" |
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195 before = top - 1 |
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196 after = bottom - 1 |
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197 for col in range(left, right): |
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198 assert self.done[col] == before |
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199 self.done[col] = after |
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200 |
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201 def check_parse_complete(self): |
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202 """Each text column should have been completely seen.""" |
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203 last = self.bottom - 1 |
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204 for col in range(self.right): |
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205 if self.done[col] != last: |
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206 return False |
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207 return True |
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208 |
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209 def scan_cell(self, top, left): |
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210 """Starting at the top-left corner, start tracing out a cell.""" |
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211 assert self.block[top][left] == '+' |
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212 result = self.scan_right(top, left) |
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213 return result |
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214 |
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215 def scan_right(self, top, left): |
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216 """ |
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217 Look for the top-right corner of the cell, and make note of all column |
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218 boundaries ('+'). |
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219 """ |
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220 colseps = {} |
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221 line = self.block[top] |
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222 for i in range(left + 1, self.right + 1): |
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223 if line[i] == '+': |
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224 colseps[i] = [top] |
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225 result = self.scan_down(top, left, i) |
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226 if result: |
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227 bottom, rowseps, newcolseps = result |
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228 update_dict_of_lists(colseps, newcolseps) |
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229 return bottom, i, rowseps, colseps |
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230 elif line[i] != '-': |
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231 return None |
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232 return None |
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233 |
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234 def scan_down(self, top, left, right): |
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235 """ |
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236 Look for the bottom-right corner of the cell, making note of all row |
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237 boundaries. |
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238 """ |
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239 rowseps = {} |
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240 for i in range(top + 1, self.bottom + 1): |
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241 if self.block[i][right] == '+': |
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242 rowseps[i] = [right] |
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243 result = self.scan_left(top, left, i, right) |
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244 if result: |
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245 newrowseps, colseps = result |
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246 update_dict_of_lists(rowseps, newrowseps) |
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247 return i, rowseps, colseps |
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248 elif self.block[i][right] != '|': |
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249 return None |
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250 return None |
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251 |
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252 def scan_left(self, top, left, bottom, right): |
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253 """ |
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254 Noting column boundaries, look for the bottom-left corner of the cell. |
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255 It must line up with the starting point. |
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256 """ |
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257 colseps = {} |
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258 line = self.block[bottom] |
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259 for i in range(right - 1, left, -1): |
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260 if line[i] == '+': |
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261 colseps[i] = [bottom] |
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262 elif line[i] != '-': |
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263 return None |
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264 if line[left] != '+': |
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265 return None |
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266 result = self.scan_up(top, left, bottom, right) |
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267 if result is not None: |
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268 rowseps = result |
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269 return rowseps, colseps |
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270 return None |
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271 |
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272 def scan_up(self, top, left, bottom, right): |
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273 """ |
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274 Noting row boundaries, see if we can return to the starting point. |
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275 """ |
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276 rowseps = {} |
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277 for i in range(bottom - 1, top, -1): |
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278 if self.block[i][left] == '+': |
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279 rowseps[i] = [left] |
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280 elif self.block[i][left] != '|': |
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281 return None |
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282 return rowseps |
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283 |
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284 def structure_from_cells(self): |
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285 """ |
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286 From the data collected by `scan_cell()`, convert to the final data |
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287 structure. |
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288 """ |
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289 rowseps = sorted(self.rowseps.keys()) # list of row boundaries |
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290 rowindex = {} |
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291 for i in range(len(rowseps)): |
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292 rowindex[rowseps[i]] = i # row boundary -> row number mapping |
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293 colseps = sorted(self.colseps.keys()) # list of column boundaries |
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294 colindex = {} |
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295 for i in range(len(colseps)): |
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296 colindex[colseps[i]] = i # column boundary -> col number map |
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297 colspecs = [(colseps[i] - colseps[i - 1] - 1) |
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298 for i in range(1, len(colseps))] # list of column widths |
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299 # prepare an empty table with the correct number of rows & columns |
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300 onerow = [None for i in range(len(colseps) - 1)] |
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301 rows = [onerow[:] for i in range(len(rowseps) - 1)] |
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302 # keep track of # of cells remaining; should reduce to zero |
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303 remaining = (len(rowseps) - 1) * (len(colseps) - 1) |
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304 for top, left, bottom, right, block in self.cells: |
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305 rownum = rowindex[top] |
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306 colnum = colindex[left] |
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307 assert rows[rownum][colnum] is None, ( |
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308 'Cell (row %s, column %s) already used.' |
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309 % (rownum + 1, colnum + 1)) |
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310 morerows = rowindex[bottom] - rownum - 1 |
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311 morecols = colindex[right] - colnum - 1 |
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312 remaining -= (morerows + 1) * (morecols + 1) |
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313 # write the cell into the table |
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314 rows[rownum][colnum] = (morerows, morecols, top + 1, block) |
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315 assert remaining == 0, 'Unused cells remaining.' |
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316 if self.head_body_sep: # separate head rows from body rows |
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317 numheadrows = rowindex[self.head_body_sep] |
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318 headrows = rows[:numheadrows] |
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319 bodyrows = rows[numheadrows:] |
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320 else: |
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321 headrows = [] |
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322 bodyrows = rows |
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323 return (colspecs, headrows, bodyrows) |
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324 |
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325 |
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326 class SimpleTableParser(TableParser): |
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327 |
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328 """ |
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329 Parse a simple table using `parse()`. |
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330 |
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331 Here's an example of a simple table:: |
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332 |
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333 ===== ===== |
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334 col 1 col 2 |
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335 ===== ===== |
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336 1 Second column of row 1. |
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337 2 Second column of row 2. |
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338 Second line of paragraph. |
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339 3 - Second column of row 3. |
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340 |
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341 - Second item in bullet |
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342 list (row 3, column 2). |
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343 4 is a span |
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344 ------------ |
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345 5 |
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346 ===== ===== |
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347 |
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348 Top and bottom borders use '=', column span underlines use '-', column |
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349 separation is indicated with spaces. |
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350 |
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351 Passing the above table to the `parse()` method will result in the |
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352 following data structure, whose interpretation is the same as for |
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353 `GridTableParser`:: |
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354 |
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355 ([5, 25], |
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356 [[(0, 0, 1, ['col 1']), |
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357 (0, 0, 1, ['col 2'])]], |
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358 [[(0, 0, 3, ['1']), |
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359 (0, 0, 3, ['Second column of row 1.'])], |
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360 [(0, 0, 4, ['2']), |
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361 (0, 0, 4, ['Second column of row 2.', |
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362 'Second line of paragraph.'])], |
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363 [(0, 0, 6, ['3']), |
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364 (0, 0, 6, ['- Second column of row 3.', |
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365 '', |
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366 '- Second item in bullet', |
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367 ' list (row 3, column 2).'])], |
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368 [(0, 1, 10, ['4 is a span'])], |
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369 [(0, 0, 12, ['5']), |
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370 (0, 0, 12, [''])]]) |
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371 """ |
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372 |
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373 head_body_separator_pat = re.compile('=[ =]*$') |
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374 span_pat = re.compile('-[ -]*$') |
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375 |
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376 def setup(self, block): |
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377 self.block = block[:] # make a copy; it will be modified |
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378 self.block.disconnect() # don't propagate changes to parent |
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379 # Convert top & bottom borders to column span underlines: |
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380 self.block[0] = self.block[0].replace('=', '-') |
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381 self.block[-1] = self.block[-1].replace('=', '-') |
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382 self.head_body_sep = None |
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383 self.columns = [] |
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384 self.border_end = None |
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385 self.table = [] |
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386 self.done = [-1] * len(block[0]) |
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387 self.rowseps = {0: [0]} |
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388 self.colseps = {0: [0]} |
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389 |
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390 def parse_table(self): |
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391 """ |
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392 First determine the column boundaries from the top border, then |
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393 process rows. Each row may consist of multiple lines; accumulate |
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394 lines until a row is complete. Call `self.parse_row` to finish the |
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395 job. |
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396 """ |
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397 # Top border must fully describe all table columns. |
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398 self.columns = self.parse_columns(self.block[0], 0) |
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399 self.border_end = self.columns[-1][1] |
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400 firststart, firstend = self.columns[0] |
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401 offset = 1 # skip top border |
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402 start = 1 |
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403 text_found = None |
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404 while offset < len(self.block): |
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405 line = self.block[offset] |
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406 if self.span_pat.match(line): |
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407 # Column span underline or border; row is complete. |
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408 self.parse_row(self.block[start:offset], start, |
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409 (line.rstrip(), offset)) |
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410 start = offset + 1 |
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411 text_found = None |
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412 elif line[firststart:firstend].strip(): |
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413 # First column not blank, therefore it's a new row. |
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414 if text_found and offset != start: |
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415 self.parse_row(self.block[start:offset], start) |
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416 start = offset |
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417 text_found = 1 |
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418 elif not text_found: |
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419 start = offset + 1 |
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420 offset += 1 |
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421 |
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422 def parse_columns(self, line, offset): |
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423 """ |
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424 Given a column span underline, return a list of (begin, end) pairs. |
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425 """ |
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426 cols = [] |
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427 end = 0 |
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428 while True: |
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429 begin = line.find('-', end) |
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430 end = line.find(' ', begin) |
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431 if begin < 0: |
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432 break |
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433 if end < 0: |
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434 end = len(line) |
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435 cols.append((begin, end)) |
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436 if self.columns: |
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437 if cols[-1][1] != self.border_end: |
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438 raise TableMarkupError('Column span incomplete in table ' |
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439 'line %s.' % (offset+1), |
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440 offset=offset) |
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441 # Allow for an unbounded rightmost column: |
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442 cols[-1] = (cols[-1][0], self.columns[-1][1]) |
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443 return cols |
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444 |
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445 def init_row(self, colspec, offset): |
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446 i = 0 |
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447 cells = [] |
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448 for start, end in colspec: |
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449 morecols = 0 |
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450 try: |
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451 assert start == self.columns[i][0] |
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452 while end != self.columns[i][1]: |
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453 i += 1 |
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454 morecols += 1 |
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455 except (AssertionError, IndexError): |
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456 raise TableMarkupError('Column span alignment problem ' |
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457 'in table line %s.' % (offset+2), |
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458 offset=offset+1) |
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459 cells.append([0, morecols, offset, []]) |
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460 i += 1 |
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461 return cells |
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462 |
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463 def parse_row(self, lines, start, spanline=None): |
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464 """ |
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465 Given the text `lines` of a row, parse it and append to `self.table`. |
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466 |
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467 The row is parsed according to the current column spec (either |
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468 `spanline` if provided or `self.columns`). For each column, extract |
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469 text from each line, and check for text in column margins. Finally, |
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470 adjust for insignificant whitespace. |
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471 """ |
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472 if not (lines or spanline): |
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473 # No new row, just blank lines. |
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474 return |
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475 if spanline: |
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476 columns = self.parse_columns(*spanline) |
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477 span_offset = spanline[1] |
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478 else: |
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479 columns = self.columns[:] |
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480 span_offset = start |
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481 self.check_columns(lines, start, columns) |
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482 row = self.init_row(columns, start) |
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483 for i in range(len(columns)): |
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484 start, end = columns[i] |
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485 cellblock = lines.get_2D_block(0, start, len(lines), end) |
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486 cellblock.disconnect() # lines in cell can't sync with parent |
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487 cellblock.replace(self.double_width_pad_char, '') |
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488 row[i][3] = cellblock |
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489 self.table.append(row) |
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490 |
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491 def check_columns(self, lines, first_line, columns): |
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492 """ |
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493 Check for text in column margins and text overflow in the last column. |
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494 Raise TableMarkupError if anything but whitespace is in column margins. |
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495 Adjust the end value for the last column if there is text overflow. |
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496 """ |
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497 # "Infinite" value for a dummy last column's beginning, used to |
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498 # check for text overflow: |
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499 columns.append((sys.maxsize, None)) |
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500 lastcol = len(columns) - 2 |
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501 # combining characters do not contribute to the column width |
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502 lines = [strip_combining_chars(line) for line in lines] |
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503 |
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504 for i in range(len(columns) - 1): |
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505 start, end = columns[i] |
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506 nextstart = columns[i+1][0] |
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507 offset = 0 |
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508 for line in lines: |
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509 if i == lastcol and line[end:].strip(): |
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510 text = line[start:].rstrip() |
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511 new_end = start + len(text) |
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512 main_start, main_end = self.columns[-1] |
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513 columns[i] = (start, max(main_end, new_end)) |
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514 if new_end > main_end: |
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515 self.columns[-1] = (main_start, new_end) |
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516 elif line[end:nextstart].strip(): |
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517 raise TableMarkupError('Text in column margin ' |
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518 'in table line %s.' % (first_line+offset+1), |
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519 offset=first_line+offset) |
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520 offset += 1 |
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521 columns.pop() |
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522 |
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523 def structure_from_cells(self): |
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524 colspecs = [end - start for start, end in self.columns] |
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525 first_body_row = 0 |
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526 if self.head_body_sep: |
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527 for i in range(len(self.table)): |
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528 if self.table[i][0][2] > self.head_body_sep: |
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529 first_body_row = i |
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530 break |
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531 return (colspecs, self.table[:first_body_row], |
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532 self.table[first_body_row:]) |
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533 |
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534 |
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535 def update_dict_of_lists(master, newdata): |
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536 """ |
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537 Extend the list values of `master` with those from `newdata`. |
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538 |
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539 Both parameters must be dictionaries containing list values. |
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540 """ |
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541 for key, values in newdata.items(): |
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542 master.setdefault(key, []).extend(values) |