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annotate env/lib/python3.7/site-packages/planemo/linters/conda_requirements.py @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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1 """Ensure requirements are matched in best practice conda channels."""
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2
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3 from planemo.conda import (
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4 BEST_PRACTICE_CHANNELS,
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5 best_practice_search,
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6 tool_source_conda_targets,
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7 )
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8
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9 lint_tool_types = ["*"]
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10
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11
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12 def lint_requirements_in_conda(tool_source, lint_ctx):
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13 """Check requirements of tool source against best practice Conda channels."""
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14 conda_targets = tool_source_conda_targets(tool_source)
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15 if not conda_targets:
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16 lint_ctx.warn("No valid package requirement tags found to check against Conda.")
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17 return
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18
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19 for conda_target in conda_targets:
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20 (best_hit, exact) = best_practice_search(conda_target)
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21 conda_target_str = conda_target.package
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22 if conda_target.version:
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23 conda_target_str += "@%s" % (conda_target.version)
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24 if best_hit and exact:
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25 template = "Requirement [%s] matches target in best practice Conda channel [%s]."
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26 message = template % (conda_target_str, best_hit.get("channel"))
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27 lint_ctx.info(message)
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28 elif best_hit:
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29 template = "Requirement [%s] doesn't exactly match available version [%s] in best practice Conda channel [%s]."
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30 message = template % (conda_target_str, best_hit['version'], best_hit.get("channel"))
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31 lint_ctx.warn(message)
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32 else:
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33 template = "Requirement [%s] doesn't match any recipe in a best practice conda channel [%s]."
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34 message = template % (conda_target_str, BEST_PRACTICE_CHANNELS)
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35 lint_ctx.warn(message)