Mercurial > repos > shellac > guppy_basecaller

annotate env/lib/python3.7/site-packages/planemo/test/data.py @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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1 """Utilities related to reasoning about test data."""
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2
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3 import os
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4
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5
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6 def find_test_data_directory(tool_paths, **kwds):
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7 path = "."
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8 if len(tool_paths) > 0:
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9 path = tool_paths[0]
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10
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11 # Find test data directory associated with path.
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12 test_data = kwds.get("test_data", None)
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13 if test_data:
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14 return os.path.abspath(test_data)
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15 else:
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16 test_data = search_tool_path_for(path, "test-data")
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17 if test_data:
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18 return test_data
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20
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21 def search_tool_path_for(path, target, extra_paths=[]):
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22 """Check for presence of a target in different artifact directories."""
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23 if not os.path.isdir(path):
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24 tool_dir = os.path.dirname(path)
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25 else:
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26 tool_dir = path
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27 possible_dirs = [tool_dir, "."] + extra_paths
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28 for possible_dir in possible_dirs:
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29 possible_path = os.path.join(possible_dir, target)
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30 if os.path.exists(possible_path):
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31 return os.path.abspath(possible_path)
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32 return None
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33
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34
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35 __all__ = (
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36 "search_tool_path_for",
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37 )