Mercurial > repos > shellac > guppy_basecaller

annotate env/lib/python3.7/site-packages/prov/constants.py @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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1 from __future__ import (absolute_import, division, print_function,
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2 unicode_literals)
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3
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4 import six
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5 from prov.identifier import Namespace
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6
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7 __author__ = 'Trung Dong Huynh'
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8 __email__ = 'trungdong@donggiang.com'
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9
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10
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11 XSD = Namespace('xsd', 'http://www.w3.org/2001/XMLSchema#')
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12 PROV = Namespace('prov', 'http://www.w3.org/ns/prov#')
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13 XSI = Namespace('xsi', 'http://www.w3.org/2001/XMLSchema-instance')
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14
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15 # C1. Entities/Activities
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16 PROV_ENTITY = PROV['Entity']
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17 PROV_ACTIVITY = PROV['Activity']
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18 PROV_GENERATION = PROV['Generation']
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19 PROV_USAGE = PROV['Usage']
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20 PROV_COMMUNICATION = PROV['Communication']
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21 PROV_START = PROV['Start']
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22 PROV_END = PROV['End']
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23 PROV_INVALIDATION = PROV['Invalidation']
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24
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25 # C2. Derivations
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26 PROV_DERIVATION = PROV['Derivation']
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27
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28 # C3. Agents/Responsibility
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29 PROV_AGENT = PROV['Agent']
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30 PROV_ATTRIBUTION = PROV['Attribution']
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31 PROV_ASSOCIATION = PROV['Association']
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32 PROV_DELEGATION = PROV['Delegation']
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33 PROV_INFLUENCE = PROV['Influence']
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34 # C4. Bundles
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35 PROV_BUNDLE = PROV['Bundle']
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36 # C5. Alternate
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37 PROV_ALTERNATE = PROV['Alternate']
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38 PROV_SPECIALIZATION = PROV['Specialization']
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39 PROV_MENTION = PROV['Mention']
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40 # C6. Collections
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41 PROV_MEMBERSHIP = PROV['Membership']
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42
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43 PROV_N_MAP = {
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44 PROV_ENTITY: u'entity',
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45 PROV_ACTIVITY: u'activity',
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46 PROV_GENERATION: u'wasGeneratedBy',
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47 PROV_USAGE: u'used',
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48 PROV_COMMUNICATION: u'wasInformedBy',
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49 PROV_START: u'wasStartedBy',
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50 PROV_END: u'wasEndedBy',
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51 PROV_INVALIDATION: u'wasInvalidatedBy',
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52 PROV_DERIVATION: u'wasDerivedFrom',
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53 PROV_AGENT: u'agent',
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54 PROV_ATTRIBUTION: u'wasAttributedTo',
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55 PROV_ASSOCIATION: u'wasAssociatedWith',
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56 PROV_DELEGATION: u'actedOnBehalfOf',
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57 PROV_INFLUENCE: u'wasInfluencedBy',
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58 PROV_ALTERNATE: u'alternateOf',
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59 PROV_SPECIALIZATION: u'specializationOf',
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60 PROV_MENTION: u'mentionOf',
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61 PROV_MEMBERSHIP: u'hadMember',
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62 PROV_BUNDLE: u'bundle',
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63 }
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64
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65 # Records defined as subtypes in PROV-N but top level types in for example
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66 # PROV XML also need a mapping.
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67 ADDITIONAL_N_MAP = {
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68 PROV['Revision']: u'wasRevisionOf',
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69 PROV['Quotation']: u'wasQuotedFrom',
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70 PROV['PrimarySource']: u'hadPrimarySource',
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71 PROV['SoftwareAgent']: u'softwareAgent',
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72 PROV['Person']: u'person',
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73 PROV['Organization']: u'organization',
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74 PROV['Plan']: u'plan',
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75 PROV['Collection']: u'collection',
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76 PROV['EmptyCollection']: u'emptyCollection',
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77 }
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78
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79 # Maps qualified names from the PROV namespace to their base class. If it
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80 # has no baseclass it maps to itsself. This is needed for example for PROV
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81 # XML (de)serializer where extended types are used a lot.
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82 PROV_BASE_CLS = {
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83 PROV_ENTITY: PROV_ENTITY,
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84 PROV_ACTIVITY: PROV_ACTIVITY,
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85 PROV_GENERATION: PROV_GENERATION,
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86 PROV_USAGE: PROV_USAGE,
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87 PROV_COMMUNICATION: PROV_COMMUNICATION,
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88 PROV_START: PROV_START,
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89 PROV_END: PROV_END,
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90 PROV_INVALIDATION: PROV_INVALIDATION,
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91 PROV_DERIVATION: PROV_DERIVATION,
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92 PROV['Revision']: PROV_DERIVATION,
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93 PROV['Quotation']: PROV_DERIVATION,
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94 PROV['PrimarySource']: PROV_DERIVATION,
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95 PROV_AGENT: PROV_AGENT,
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96 PROV['SoftwareAgent']: PROV_AGENT,
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97 PROV['Person']: PROV_AGENT,
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98 PROV['Organization']: PROV_AGENT,
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99 PROV_ATTRIBUTION: PROV_ATTRIBUTION,
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100 PROV_ASSOCIATION: PROV_ASSOCIATION,
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101 PROV['Plan']: PROV_ENTITY,
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102 PROV_DELEGATION: PROV_DELEGATION,
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103 PROV_INFLUENCE: PROV_INFLUENCE,
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104 PROV_ALTERNATE: PROV_ALTERNATE,
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105 PROV_SPECIALIZATION: PROV_SPECIALIZATION,
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106 PROV_MENTION: PROV_MENTION,
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107 PROV['Collection']: PROV_ENTITY,
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108 PROV['EmptyCollection']: PROV_ENTITY,
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109 PROV_MEMBERSHIP: PROV_MEMBERSHIP,
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110 PROV_BUNDLE: PROV_ENTITY
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111 }
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112
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113 # Identifiers for PROV's attributes
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114 PROV_ATTR_ENTITY = PROV['entity']
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115 PROV_ATTR_ACTIVITY = PROV['activity']
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116 PROV_ATTR_TRIGGER = PROV['trigger']
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117 PROV_ATTR_INFORMED = PROV['informed']
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118 PROV_ATTR_INFORMANT = PROV['informant']
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119 PROV_ATTR_STARTER = PROV['starter']
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120 PROV_ATTR_ENDER = PROV['ender']
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121 PROV_ATTR_AGENT = PROV['agent']
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122 PROV_ATTR_PLAN = PROV['plan']
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123 PROV_ATTR_DELEGATE = PROV['delegate']
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124 PROV_ATTR_RESPONSIBLE = PROV['responsible']
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125 PROV_ATTR_GENERATED_ENTITY = PROV['generatedEntity']
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126 PROV_ATTR_USED_ENTITY = PROV['usedEntity']
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127 PROV_ATTR_GENERATION = PROV['generation']
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128 PROV_ATTR_USAGE = PROV['usage']
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129 PROV_ATTR_SPECIFIC_ENTITY = PROV['specificEntity']
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130 PROV_ATTR_GENERAL_ENTITY = PROV['generalEntity']
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131 PROV_ATTR_ALTERNATE1 = PROV['alternate1']
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132 PROV_ATTR_ALTERNATE2 = PROV['alternate2']
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133 PROV_ATTR_BUNDLE = PROV['bundle']
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134 PROV_ATTR_INFLUENCEE = PROV['influencee']
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135 PROV_ATTR_INFLUENCER = PROV['influencer']
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136 PROV_ATTR_COLLECTION = PROV['collection']
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137
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138 # Literal properties
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139 PROV_ATTR_TIME = PROV['time']
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140 PROV_ATTR_STARTTIME = PROV['startTime']
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141 PROV_ATTR_ENDTIME = PROV['endTime']
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142
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143
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144 PROV_ATTRIBUTE_QNAMES = {
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145 PROV_ATTR_ENTITY,
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146 PROV_ATTR_ACTIVITY,
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147 PROV_ATTR_TRIGGER,
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148 PROV_ATTR_INFORMED,
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149 PROV_ATTR_INFORMANT,
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150 PROV_ATTR_STARTER,
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151 PROV_ATTR_ENDER,
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152 PROV_ATTR_AGENT,
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153 PROV_ATTR_PLAN,
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154 PROV_ATTR_DELEGATE,
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155 PROV_ATTR_RESPONSIBLE,
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156 PROV_ATTR_GENERATED_ENTITY,
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157 PROV_ATTR_USED_ENTITY,
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158 PROV_ATTR_GENERATION,
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159 PROV_ATTR_USAGE,
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160 PROV_ATTR_SPECIFIC_ENTITY,
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161 PROV_ATTR_GENERAL_ENTITY,
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162 PROV_ATTR_ALTERNATE1,
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163 PROV_ATTR_ALTERNATE2,
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164 PROV_ATTR_BUNDLE,
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165 PROV_ATTR_INFLUENCEE,
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166 PROV_ATTR_INFLUENCER,
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167 PROV_ATTR_COLLECTION
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168 }
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169 PROV_ATTRIBUTE_LITERALS = {
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170 PROV_ATTR_TIME, PROV_ATTR_STARTTIME, PROV_ATTR_ENDTIME
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171 }
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172
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173 # Set of formal attributes of PROV records
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174 PROV_ATTRIBUTES = PROV_ATTRIBUTE_QNAMES | PROV_ATTRIBUTE_LITERALS
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175 PROV_RECORD_ATTRIBUTES = list((attr, six.text_type(attr)) for attr in
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176 PROV_ATTRIBUTES)
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177
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178 PROV_RECORD_IDS_MAP = dict(
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179 (PROV_N_MAP[rec_type_id], rec_type_id) for rec_type_id in PROV_N_MAP
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180 )
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181 PROV_ID_ATTRIBUTES_MAP = dict(
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182 (prov_id, attribute) for (prov_id, attribute) in PROV_RECORD_ATTRIBUTES
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183 )
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184 PROV_ATTRIBUTES_ID_MAP = dict(
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185 (attribute, prov_id) for (prov_id, attribute) in PROV_RECORD_ATTRIBUTES
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186 )
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187
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188 # Extra definition for convenience
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189 PROV_TYPE = PROV['type']
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190 PROV_LABEL = PROV['label']
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191 PROV_VALUE = PROV['value']
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192 PROV_LOCATION = PROV['location']
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193 PROV_ROLE = PROV['role']
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194
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195 PROV_QUALIFIEDNAME = PROV['QUALIFIED_NAME']
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196
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197 # XSD DATA TYPES
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198 XSD_ANYURI = XSD['anyURI']
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199 XSD_QNAME = XSD['QName']
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200 XSD_DATETIME = XSD['dateTime']
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201 XSD_TIME = XSD['time']
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202 XSD_DATE = XSD['date']
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203 XSD_STRING = XSD['string']
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204 XSD_BOOLEAN = XSD['boolean']
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205 # All XSD Integer types
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206 XSD_INTEGER = XSD['integer']
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207 XSD_LONG = XSD['long']
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208 XSD_INT = XSD['int']
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209 XSD_SHORT = XSD['short']
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210 XSD_BYTE = XSD['byte']
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211 XSD_NONNEGATIVEINTEGER = XSD['nonNegativeInteger']
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212 XSD_UNSIGNEDLONG = XSD['unsignedLong']
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213 XSD_UNSIGNEDINT = XSD['unsignedInt']
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214 XSD_UNSIGNEDSHORT = XSD['unsignedShort']
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215 XSD_UNSIGNEDBYTE = XSD['unsignedByte']
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216 XSD_POSITIVEINTEGER = XSD['positiveInteger']
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217 XSD_NONPOSITIVEINTEGER = XSD['nonPositiveInteger']
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218 XSD_NEGATIVEINTEGER = XSD['negativeInteger']
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219 # All XSD real number types
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220 XSD_FLOAT = XSD['float']
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221 XSD_DOUBLE = XSD['double']
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222 XSD_DECIMAL = XSD['decimal']