Mercurial > repos > shellac > guppy_basecaller

annotate env/lib/python3.7/site-packages/prov/tests/examples.py @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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1 # coding: utf8
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2 from __future__ import (absolute_import, division, print_function,
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3 unicode_literals)
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4
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5 from prov.model import ProvDocument, Namespace, Literal, PROV, Identifier
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6 import datetime
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7
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8
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9 def primer_example():
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10 # https://github.com/lucmoreau/ProvToolbox/blob/master/prov-n/src/test/resources/prov/primer.pn
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11 #===========================================================================
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12 # document
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13 g = ProvDocument()
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14
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15 # prefix ex <http://example/>
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16 # prefix dcterms <http://purl.org/dc/terms/>
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17 # prefix foaf <http://xmlns.com/foaf/0.1/>
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18 ex = Namespace('ex', 'http://example/') # namespaces do not need to be explicitly added to a document
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19 g.add_namespace("dcterms", "http://purl.org/dc/terms/")
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20 g.add_namespace("foaf", "http://xmlns.com/foaf/0.1/")
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21
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22 # entity(ex:article, [dcterms:title="Crime rises in cities"])
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23 # first time the ex namespace was used, it is added to the document automatically
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24 g.entity(ex['article'], {'dcterms:title': "Crime rises in cities"})
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25 # entity(ex:articleV1)
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26 g.entity(ex['articleV1'])
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27 # entity(ex:articleV2)
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28 g.entity(ex['articleV2'])
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29 # entity(ex:dataSet1)
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30 g.entity(ex['dataSet1'])
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31 # entity(ex:dataSet2)
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32 g.entity(ex['dataSet2'])
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33 # entity(ex:regionList)
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34 g.entity(ex['regionList'])
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35 # entity(ex:composition)
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36 g.entity(ex['composition'])
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37 # entity(ex:chart1)
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38 g.entity(ex['chart1'])
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39 # entity(ex:chart2)
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40 g.entity(ex['chart2'])
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41 # entity(ex:blogEntry)
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42 g.entity(ex['blogEntry'])
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43
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44 # activity(ex:compile)
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45 g.activity('ex:compile') # since ex is registered, it can be used like this
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46 # activity(ex:compile2)
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47 g.activity('ex:compile2')
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48 # activity(ex:compose)
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49 g.activity('ex:compose')
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50 # activity(ex:correct, 2012-03-31T09:21:00, 2012-04-01T15:21:00)
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51 g.activity('ex:correct', '2012-03-31T09:21:00', '2012-04-01T15:21:00') # date time can be provided as strings
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52 # activity(ex:illustrate)
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53 g.activity('ex:illustrate')
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54
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55 # used(ex:compose, ex:dataSet1, -, [ prov:role = "ex:dataToCompose"])
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56 g.used('ex:compose', 'ex:dataSet1', other_attributes={'prov:role': "ex:dataToCompose"})
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57 # used(ex:compose, ex:regionList, -, [ prov:role = "ex:regionsToAggregateBy"])
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58 g.used('ex:compose', 'ex:regionList', other_attributes={'prov:role': "ex:regionsToAggregateBy"})
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59 # wasGeneratedBy(ex:composition, ex:compose, -)
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60 g.wasGeneratedBy('ex:composition', 'ex:compose')
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61
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62 # used(ex:illustrate, ex:composition, -)
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63 g.used('ex:illustrate', 'ex:composition')
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64 # wasGeneratedBy(ex:chart1, ex:illustrate, -)
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65 g.wasGeneratedBy('ex:chart1', 'ex:illustrate')
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66
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67 # wasGeneratedBy(ex:chart1, ex:compile, 2012-03-02T10:30:00)
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68 g.wasGeneratedBy('ex:chart1', 'ex:compile', '2012-03-02T10:30:00')
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69 # wasGeneratedBy(ex:chart2, ex:compile2, 2012-04-01T15:21:00)
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70 #
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71 #
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72 # agent(ex:derek, [ prov:type="prov:Person", foaf:givenName = "Derek",
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73 # foaf:mbox= "<mailto:derek@example.org>"])
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74 g.agent('ex:derek', {
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75 'prov:type': PROV["Person"], 'foaf:givenName': "Derek", 'foaf:mbox': "<mailto:derek@example.org>"
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76 })
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77 # wasAssociatedWith(ex:compose, ex:derek, -)
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78 g.wasAssociatedWith('ex:compose', 'ex:derek')
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79 # wasAssociatedWith(ex:illustrate, ex:derek, -)
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80 g.wasAssociatedWith('ex:illustrate', 'ex:derek')
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81 #
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82 # agent(ex:chartgen, [ prov:type="prov:Organization",
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83 # foaf:name = "Chart Generators Inc"])
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84 g.agent('ex:chartgen', {'prov:type': PROV["Organization"], 'foaf:name': "Chart Generators Inc"})
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85 # actedOnBehalfOf(ex:derek, ex:chartgen, ex:compose)
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86 g.actedOnBehalfOf('ex:derek', 'ex:chartgen', 'ex:compose')
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87 # wasAttributedTo(ex:chart1, ex:derek)
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88 g.wasAttributedTo('ex:chart1', 'ex:derek')
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89
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90 # wasGeneratedBy(ex:dataSet2, ex:correct, -)
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91 g.wasGeneratedBy('ex:dataSet2', 'ex:correct')
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92 # used(ex:correct, ex:dataSet1, -)
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93 g.used('ex:correct', 'ex:dataSet1')
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94 # wasDerivedFrom(ex:dataSet2, ex:dataSet1, [prov:type='prov:Revision'])
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95 g.wasDerivedFrom('ex:dataSet2', 'ex:dataSet1', other_attributes={'prov:type': PROV['Revision']})
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96 # wasDerivedFrom(ex:chart2, ex:dataSet2)
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97 g.wasDerivedFrom('ex:chart2', 'ex:dataSet2')
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98
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99 # wasDerivedFrom(ex:blogEntry, ex:article, [prov:type='prov:Quotation'])
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100 g.wasDerivedFrom('ex:blogEntry', 'ex:article', other_attributes={'prov:type': PROV['Quotation']})
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101 # specializationOf(ex:articleV1, ex:article)
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102 g.specializationOf('ex:articleV1', 'ex:article')
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103 # wasDerivedFrom(ex:articleV1, ex:dataSet1)
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104 g.wasDerivedFrom('ex:articleV1', 'ex:dataSet1')
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105
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106 # specializationOf(ex:articleV2, ex:article)
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107 g.specializationOf('ex:articleV2', 'ex:article')
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108 # wasDerivedFrom(ex:articleV2, ex:dataSet2)
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109 g.wasDerivedFrom('ex:articleV2', 'ex:dataSet2')
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110
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111 # alternateOf(ex:articleV2, ex:articleV1)
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112 g.alternateOf('ex:articleV2', 'ex:articleV1')
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113
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114 # endDocument
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115 return g
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116
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117
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118 def primer_example_alternate():
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119 g = ProvDocument(namespaces={
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120 'ex': 'http://example/',
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121 'dcterms': 'http://purl.org/dc/terms/',
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122 'foaf': 'http://xmlns.com/foaf/0.1/'
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123 })
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124
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125 article = g.entity('ex:article', {'dcterms:title': "Crime rises in cities"})
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126 articleV1 = g.entity('ex:articleV1')
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127 articleV2 = g.entity('ex:articleV2')
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128 dataSet1 = g.entity('ex:dataSet1')
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129 dataSet2 = g.entity('ex:dataSet2')
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130 regionList = g.entity('ex:regionList')
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131 composition = g.entity('ex:composition')
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132 chart1 = g.entity('ex:chart1')
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133 chart2 = g.entity('ex:chart2')
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134 blogEntry = g.entity('ex:blogEntry')
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135
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136 compile = g.activity('ex:compile')
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137 compile2 = g.activity('ex:compile2')
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138 compose = g.activity('ex:compose')
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139 correct = g.activity('ex:correct', '2012-03-31T09:21:00', '2012-04-01T15:21:00')
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140 illustrate = g.activity('ex:illustrate')
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141
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142 compose.used(dataSet1, attributes={'prov:role': "ex:dataToCompose"})
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143 compose.used(regionList, attributes={'prov:role': "ex:regionsToAggregateBy"})
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144 composition.wasGeneratedBy(compose)
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145
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146 illustrate.used(composition)
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147 chart1.wasGeneratedBy(illustrate)
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148
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149 chart1.wasGeneratedBy(compile, '2012-03-02T10:30:00')
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150
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151 derek = g.agent('ex:derek', {
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152 'prov:type': PROV['Person'], 'foaf:givenName': "Derek", 'foaf:mbox': "<mailto:derek@example.org>"
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153 })
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154 compose.wasAssociatedWith(derek)
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155 illustrate.wasAssociatedWith(derek)
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156
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157 chartgen = g.agent('ex:chartgen', {
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158 'prov:type': PROV["Organization"], 'foaf:name': "Chart Generators Inc"
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159 })
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160 derek.actedOnBehalfOf(chartgen, compose)
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161 chart1.wasAttributedTo(derek)
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162
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163 dataSet2.wasGeneratedBy(correct)
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164 correct.used(dataSet1)
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165 dataSet2.wasDerivedFrom(dataSet1, attributes={'prov:type': PROV['Revision']})
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166 chart2.wasDerivedFrom(dataSet2)
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167
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168 blogEntry.wasDerivedFrom(article, attributes={'prov:type': PROV['Quotation']})
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169 articleV1.specializationOf(article)
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170 articleV1.wasDerivedFrom(dataSet1)
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171
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172 articleV2.specializationOf(article)
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173 articleV2.wasDerivedFrom(dataSet2)
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174
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175 articleV2.alternateOf(articleV1)
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176
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177 return g
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178
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179
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180 def w3c_publication_1():
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181 # https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication1.prov-asn
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182 #===========================================================================
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183 # bundle
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184 #
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185 # prefix ex <http://example.org/>
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186 #
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187 # prefix w3 <http://www.w3.org/>
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188 # prefix tr <http://www.w3.org/TR/2011/>
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189 # prefix process <http://www.w3.org/2005/10/Process-20051014/tr.html#>
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190 # prefix email <https://lists.w3.org/Archives/Member/w3c-archive/>
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191 # prefix chairs <https://lists.w3.org/Archives/Member/chairs/>
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192 # prefix trans <http://www.w3.org/2005/08/01-transitions.html#>
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193 # prefix rec54 <http://www.w3.org/2001/02pd/rec54#>
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194 #
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195 #
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196 # entity(tr:WD-prov-dm-20111018, [ prov:type='rec54:WD' ])
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197 # entity(tr:WD-prov-dm-20111215, [ prov:type='rec54:WD' ])
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198 # entity(process:rec-advance, [ prov:type='prov:Plan' ])
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199 #
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200 #
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201 # entity(chairs:2011OctDec/0004, [ prov:type='trans:transreq' ])
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202 # entity(email:2011Oct/0141, [ prov:type='trans:pubreq' ])
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203 # entity(email:2011Dec/0111, [ prov:type='trans:pubreq' ])
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204 #
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205 #
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206 # wasDerivedFrom(tr:WD-prov-dm-20111215, tr:WD-prov-dm-20111018)
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207 #
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208 #
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209 # activity(ex:act1,-,-,[prov:type="publish"])
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210 # activity(ex:act2,-,-,[prov:type="publish"])
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211 #
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212 # wasGeneratedBy(tr:WD-prov-dm-20111018, ex:act1, -)
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213 # wasGeneratedBy(tr:WD-prov-dm-20111215, ex:act2, -)
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214 #
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215 # used(ex:act1, chairs:2011OctDec/0004, -)
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216 # used(ex:act1, email:2011Oct/0141, -)
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217 # used(ex:act2, email:2011Dec/0111, -)
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218 #
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219 # agent(w3:Consortium, [ prov:type='prov:Organization' ])
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220 #
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221 # wasAssociatedWith(ex:act1, w3:Consortium, process:rec-advance)
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222 # wasAssociatedWith(ex:act2, w3:Consortium, process:rec-advance)
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223 #
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224 # endBundle
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225 #===========================================================================
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226
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227 g = ProvDocument()
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228 g.add_namespace('ex', 'http://example.org/')
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229 g.add_namespace('w3', 'http://www.w3.org/')
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230 g.add_namespace('tr', 'http://www.w3.org/TR/2011/')
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231 g.add_namespace('process', 'http://www.w3.org/2005/10/Process-20051014/tr.html#')
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232 g.add_namespace('email', 'https://lists.w3.org/Archives/Member/w3c-archive/')
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233 g.add_namespace('chairs', 'https://lists.w3.org/Archives/Member/chairs/')
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234 g.add_namespace('trans', 'http://www.w3.org/2005/08/01-transitions.html#')
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235 g.add_namespace('rec54', 'http://www.w3.org/2001/02pd/rec54#')
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236
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237 g.entity('tr:WD-prov-dm-20111018', {'prov:type': 'rec54:WD'})
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238 g.entity('tr:WD-prov-dm-20111215', {'prov:type': 'rec54:WD'})
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239 g.entity('process:rec-advance', {'prov:type': 'prov:Plan'})
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240
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241 g.entity('chairs:2011OctDec/0004', {'prov:type': 'trans:transreq'})
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242 g.entity('email:2011Oct/0141', {'prov:type': 'trans:pubreq'})
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243 g.entity('email:2011Dec/0111', {'prov:type': 'trans:pubreq'})
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244
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245 g.wasDerivedFrom('tr:WD-prov-dm-20111215', 'tr:WD-prov-dm-20111018')
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246
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247 g.activity('ex:act1', other_attributes={'prov:type': "publish"})
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248 g.activity('ex:act2', other_attributes={'prov:type': "publish"})
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249
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250 g.wasGeneratedBy('tr:WD-prov-dm-20111018', 'ex:act1')
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251 g.wasGeneratedBy('tr:WD-prov-dm-20111215', 'ex:act2')
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252
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253 g.used('ex:act1', 'chairs:2011OctDec/0004')
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254 g.used('ex:act1', 'email:2011Oct/0141')
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255 g.used('ex:act2', 'email:2011Dec/0111')
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256
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257 g.agent('w3:Consortium', other_attributes={'prov:type': "Organization"})
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258
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259 g.wasAssociatedWith('ex:act1', 'w3:Consortium', 'process:rec-advance')
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260 g.wasAssociatedWith('ex:act2', 'w3:Consortium', 'process:rec-advance')
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261
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262 return g
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263
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264
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265 def w3c_publication_2():
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266 # https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication2.prov-asn
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267 #===========================================================================
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268 # bundle
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269 #
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270 # prefix ex <http://example.org/>
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271 # prefix rec <http://example.org/record>
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272 #
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273 # prefix w3 <http://www.w3.org/TR/2011/>
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274 # prefix hg <http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/>
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275 #
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276 #
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277 # entity(hg:Overview.html, [ prov:type="file in hg" ])
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278 # entity(w3:WD-prov-dm-20111215, [ prov:type="html4" ])
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279 #
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280 #
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281 # activity(ex:rcp,-,-,[prov:type="copy directory"])
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282 #
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283 # wasGeneratedBy(rec:g; w3:WD-prov-dm-20111215, ex:rcp, -)
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284 #
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285 # entity(ex:req3, [ prov:type="http://www.w3.org/2005/08/01-transitions.html#pubreq" %% xsd:anyURI ])
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286 #
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287 # used(rec:u; ex:rcp,hg:Overview.html,-)
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288 # used(ex:rcp, ex:req3, -)
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289 #
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290 #
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291 # wasDerivedFrom(w3:WD-prov-dm-20111215, hg:Overview.html, ex:rcp, rec:g, rec:u)
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292 #
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293 # agent(ex:webmaster, [ prov:type='prov:Person' ])
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294 #
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295 # wasAssociatedWith(ex:rcp, ex:webmaster, -)
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296 #
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297 # endBundle
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298 #===========================================================================
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299
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300 ex = Namespace('ex', 'http://example.org/')
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301 rec = Namespace('rec', 'http://example.org/record')
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302 w3 = Namespace('w3', 'http://www.w3.org/TR/2011/')
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303 hg = Namespace('hg', 'http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/')
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304
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305 g = ProvDocument()
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306
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307 g.entity(hg['Overview.html'], {'prov:type': "file in hg"})
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308 g.entity(w3['WD-prov-dm-20111215'], {'prov:type': "html4"})
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309
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310 g.activity(ex['rcp'], None, None, {'prov:type': "copy directory"})
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311
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312 g.wasGeneratedBy('w3:WD-prov-dm-20111215', 'ex:rcp', identifier=rec['g'])
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313
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314 g.entity('ex:req3', {'prov:type': Identifier("http://www.w3.org/2005/08/01-transitions.html#pubreq")})
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315
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316 g.used('ex:rcp', 'hg:Overview.html', identifier='rec:u')
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317 g.used('ex:rcp', 'ex:req3')
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318
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319 g.wasDerivedFrom('w3:WD-prov-dm-20111215', 'hg:Overview.html', 'ex:rcp', 'rec:g', 'rec:u')
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320
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321 g.agent('ex:webmaster', {'prov:type': "Person"})
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322
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323 g.wasAssociatedWith('ex:rcp', 'ex:webmaster')
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324
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325 return g
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326
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327
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328 def bundles1():
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329 # https://github.com/lucmoreau/ProvToolbox/blob/master/prov-n/src/test/resources/prov/bundles1.provn
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330 #===============================================================================
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331 # document
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332 g = ProvDocument()
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333
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334 # prefix ex <http://example.org/example/>
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335 EX = Namespace("ex", "http://www.example.com/")
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336 g.add_namespace(EX)
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337
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338 # prefix alice <http://example.org/alice/>
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339 # prefix bob <http://example.org/bob/>
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340 g.add_namespace('alice', 'http://example.org/alice/')
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341 g.add_namespace('bob', 'http://example.org/bob/')
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342
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343 # entity(bob:bundle1, [prov:type='prov:Bundle'])
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344 g.entity('bob:bundle1', {'prov:type': PROV['Bundle']})
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345 # wasGeneratedBy(bob:bundle1, -, 2012-05-24T10:30:00)
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346 g.wasGeneratedBy('bob:bundle1', time='2012-05-24T10:30:00')
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347 # agent(ex:Bob)
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348 g.agent('ex:Bob')
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349 # wasAttributedTo(bob:bundle1, ex:Bob)
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350 g.wasAttributedTo('bob:bundle1', 'ex:Bob')
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351
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352 # entity(alice:bundle2, [ prov:type='prov:Bundle' ])
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353 g.entity('alice:bundle2', {'prov:type': PROV['Bundle']})
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354 # wasGeneratedBy(alice:bundle2, -, 2012-05-25T11:15:00)
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355 g.wasGeneratedBy('alice:bundle2', time='2012-05-25T11:15:00')
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356 # agent(ex:Alice)
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357 g.agent('ex:Alice')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
358 # wasAttributedTo(alice:bundle2, ex:Alice)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
359 g.wasAttributedTo('alice:bundle2', 'ex:Alice')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
360
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
361 # bundle bob:bundle1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
362 b1 = g.bundle('bob:bundle1')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
363 # entity(ex:report1, [ prov:type="report", ex:version=1 ])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
364 b1.entity('ex:report1', {'prov:type': "report", 'ex:version': 1})
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
365 # wasGeneratedBy(ex:report1, -, 2012-05-24T10:00:01)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
366 b1.wasGeneratedBy('ex:report1', time='2012-05-24T10:00:01')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
367 # endBundle
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
368
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
369 # bundle alice:bundle2
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
370 b2 = g.bundle('alice:bundle2')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
371 # entity(ex:report1)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
372 b2.entity('ex:report1')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
373 # entity(ex:report2, [ prov:type="report", ex:version=2 ])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
374 b2.entity('ex:report2', {'prov:type': "report", 'ex:version': 2})
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
375 # wasGeneratedBy(ex:report2, -, 2012-05-25T11:00:01)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
376 b2.wasGeneratedBy('ex:report2', time='2012-05-25T11:00:01')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
377 # wasDerivedFrom(ex:report2, ex:report1)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
378 b2.wasDerivedFrom('ex:report2', 'ex:report1')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
379 # endBundle
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
380
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
381 # endDocument
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
382 return g
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
383
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
384
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
385 def bundles2():
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
386 # https://github.com/lucmoreau/ProvToolbox/blob/master/prov-n/src/test/resources/prov/bundles2.provn
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
387 #===========================================================================
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
388 # document
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
389 g = ProvDocument()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
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390
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
391 # prefix ex <http://example.org/example/>
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
392 g.add_namespace("ex", "http://www.example.com/")
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
393
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
394 # prefix alice <http://example.org/alice/>
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
395 # prefix bob <http://example.org/bob/>
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
396 g.add_namespace('alice', 'http://example.org/alice/')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
397 g.add_namespace('bob', 'http://example.org/bob/')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
398
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
399 # entity(bob:bundle4, [prov:type='prov:Bundle'])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
400 # wasGeneratedBy(bob:bundle4, -, 2012-05-24T10:30:00)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
401 # agent(ex:Bob)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
402 # wasAttributedTo(bob:bundle4, ex:Bob)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
403 g.entity('bob:bundle4', {'prov:type': PROV['Bundle']})
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
404 g.wasGeneratedBy('bob:bundle4', time='2012-05-24T10:30:00')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
405 g.agent('ex:Bob')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
406 g.wasAttributedTo('bob:bundle4', 'ex:Bob')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
407
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
408 # entity(alice:bundle5, [ prov:type='prov:Bundle' ])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
409 # wasGeneratedBy(alice:bundle5, -, 2012-05-25T11:15:00)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
410 # agent(ex:Alice)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
411 # wasAttributedTo(alice:bundle5, ex:Alice)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
412 g.entity('alice:bundle5', {'prov:type': PROV['Bundle']})
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
413 g.wasGeneratedBy('alice:bundle5', time='2012-05-25T11:15:00')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
414 g.agent('ex:Alice')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
415 g.wasAttributedTo('alice:bundle5', 'ex:Alice')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
416
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
417 # bundle bob:bundle4
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
418 # entity(ex:report1, [ prov:type="report", ex:version=1 ])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
419 # wasGeneratedBy(ex:report1, -, 2012-05-24T10:00:01)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
420 # endBundle
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
421 b4 = g.bundle('bob:bundle4')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
422 b4.entity('ex:report1', {'prov:type': "report", 'ex:version': 1})
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
423 b4.wasGeneratedBy('ex:report1', time='2012-05-24T10:00:01')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
424
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
425 # bundle alice:bundle5
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
426 # entity(ex:report1bis)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
427 # mentionOf(ex:report1bis, ex:report1, bob:bundle4)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
428 # entity(ex:report2, [ prov:type="report", ex:version=2 ])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
429 # wasGeneratedBy(ex:report2, -, 2012-05-25T11:00:01)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
430 # wasDerivedFrom(ex:report2, ex:report1bis)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
431 # endBundle
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
432 b5 = g.bundle('alice:bundle5')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
433 b5.entity('ex:report1bis')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
434 b5.mentionOf('ex:report1bis', 'ex:report1', 'bob:bundle4')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
435 b5.entity('ex:report2', [('prov:type', "report"), ('ex:version', 2)])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
436 b5.wasGeneratedBy('ex:report2', time='2012-05-25T11:00:01')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
437 b5.wasDerivedFrom('ex:report2', 'ex:report1bis')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
438
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
439 # endDocument
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
440 return g
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
441
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
442
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
443 def collections():
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
444 g = ProvDocument()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
445 ex = Namespace('ex', 'http://example.org/')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
446
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
447 c1 = g.collection(ex['c1'])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
448 e1 = g.entity('ex:e1')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
449 g.hadMember(c1, e1)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
450
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
451 return g
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
452
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
453
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
454 def datatypes():
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
455 g = ProvDocument()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
456 ex = Namespace('ex', 'http://example.org/')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
457 g.add_namespace(ex)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
458
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
459 attributes = {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
460 'ex:int': 100,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
461 'ex:float': 100.123456,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
462 'ex:long': 123456789000,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
463 'ex:bool': True,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
464 'ex:str': 'Some string',
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
465 'ex:unicode': u'Some unicode string with accents: Huỳnh Trung Đông',
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
466 'ex:timedate': datetime.datetime(2012, 12, 12, 14, 7, 48),
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
467 'ex:intstr': Literal("PROV Internationalized string", PROV["InternationalizedString"], "en"),
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
468 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
469 multiline = """Line1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
470 Line2
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
471 Line3"""
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
472 attributes['ex:multi-line'] = multiline
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
473 g.entity('ex:e1', attributes)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
474 return g
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
475
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
476
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
477 def long_literals():
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
478 g = ProvDocument()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
479
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
480 long_uri = "http://Lorem.ipsum/dolor/sit/amet/consectetur/adipiscing/elit/Quisque/vel/sollicitudin/felis/nec/" \
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481 "venenatis/massa/Aenean/lectus/arcu/sagittis/sit/amet/nisl/nec/varius/eleifend/sem/In/hac/habitasse/" \
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482 "platea/dictumst/Aliquam/eget/fermentum/enim/Curabitur/auctor/elit/non/ipsum/interdum/at/orci/aliquam/"
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483 ex = Namespace('ex', long_uri)
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484 g.add_namespace(ex)
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485
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486 g.entity('ex:e1', {
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487 'prov:label': 'Lorem ipsum dolor sit amet, consectetur adipiscing elit. Donec pellentesque luctus nulla vel '
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shellac
parents:
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488 'ullamcorper. Donec sit amet ligula sit amet lorem pretium rhoncus vel vel lorem. Sed at '
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diff changeset
489 'consequat metus, eget eleifend massa. Fusce a facilisis turpis. Lorem volutpat.'
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shellac
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490 })
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shellac
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491
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shellac
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492 return g
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493
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494 tests = [
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495 ('Bundle1', bundles1),
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496 ('Bundle2', bundles2),
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497 ('Primer', primer_example),
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498 ('W3C Publication 1', w3c_publication_1),
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499 ('W3C Publication 2', w3c_publication_2),
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500 ('collections', collections),
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501 ('datatypes', datatypes),
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shellac
parents:
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502 ('Long literals', long_literals),
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shellac
parents:
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503 ]