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annotate env/lib/python3.7/site-packages/rdflib/extras/infixowl.py @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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1 #!/usr/bin/env python
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2 # -*- coding: utf-8 -*-
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3 from rdflib import py3compat
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4
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5 __doc__ = py3compat.format_doctest_out("""
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6 RDFLib Python binding for OWL Abstract Syntax
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7
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8 see: http://www.w3.org/TR/owl-semantics/syntax.html
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9 http://owl-workshop.man.ac.uk/acceptedLong/submission_9.pdf
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10
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11 3.2.3 Axioms for complete classes without using owl:equivalentClass
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12
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13 Named class description of type 2 (with owl:oneOf) or type 4-6
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14 (with owl:intersectionOf, owl:unionOf or owl:complementOf
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16
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17 Uses Manchester Syntax for __repr__
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18
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19 >>> exNs = Namespace('http://example.com/')
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20 >>> namespace_manager = NamespaceManager(Graph())
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21 >>> namespace_manager.bind('ex', exNs, override=False)
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22 >>> namespace_manager.bind('owl', OWL_NS, override=False)
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23 >>> g = Graph()
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24 >>> g.namespace_manager = namespace_manager
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25
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26 Now we have an empty graph, we can construct OWL classes in it
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27 using the Python classes defined in this module
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28
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29 >>> a = Class(exNs.Opera, graph=g)
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30
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31 Now we can assert rdfs:subClassOf and owl:equivalentClass relationships
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32 (in the underlying graph) with other classes using the 'subClassOf'
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33 and 'equivalentClass' descriptors which can be set to a list
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34 of objects for the corresponding predicates.
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35
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36 >>> a.subClassOf = [exNs.MusicalWork]
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37
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38 We can then access the rdfs:subClassOf relationships
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39
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40 >>> print(list(a.subClassOf))
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41 [Class: ex:MusicalWork ]
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42
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43 This can also be used against already populated graphs:
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44
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45 >>> owlGraph = Graph().parse(OWL_NS) #doctest: +SKIP
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46 >>> namespace_manager.bind('owl', OWL_NS, override=False) #doctest: +SKIP
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47 >>> owlGraph.namespace_manager = namespace_manager #doctest: +SKIP
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48 >>> list(Class(OWL_NS.Class, graph=owlGraph).subClassOf) #doctest: +SKIP
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49 [Class: rdfs:Class ]
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50
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51 Operators are also available. For instance we can add ex:Opera to the extension
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52 of the ex:CreativeWork class via the '+=' operator
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53
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54 >>> a #doctest: +SKIP
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55 Class: ex:Opera SubClassOf: ex:MusicalWork
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56 >>> b = Class(exNs.CreativeWork, graph=g)
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57 >>> b += a
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58 >>> print(sorted(a.subClassOf, key=lambda c:c.identifier)) #doctest: +SKIP
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59 [Class: ex:CreativeWork , Class: ex:MusicalWork ]
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60
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61 And we can then remove it from the extension as well
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62
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63 >>> b -= a
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64 >>> a #doctest: +SKIP
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65 Class: ex:Opera SubClassOf: ex:MusicalWork
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66
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67 Boolean class constructions can also be created with Python operators.
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68 For example, The | operator can be used to construct a class consisting of a
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69 owl:unionOf the operands:
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70
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71 >>> c = a | b | Class(exNs.Work, graph=g)
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72 >>> c #doctest: +SKIP
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73 ( ex:Opera OR ex:CreativeWork OR ex:Work )
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74
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75 Boolean class expressions can also be operated as lists (using python list
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76 operators)
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77
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78 >>> del c[c.index(Class(exNs.Work, graph=g))]
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79 >>> c #doctest: +SKIP
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80 ( ex:Opera OR ex:CreativeWork )
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81
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82 The '&' operator can be used to construct class intersection:
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83
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84 >>> woman = Class(exNs.Female, graph=g) & Class(exNs.Human, graph=g)
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85 >>> woman.identifier = exNs.Woman
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86 >>> woman #doctest: +SKIP
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87 ( ex:Female AND ex:Human )
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88 >>> len(woman)
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89 2
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90
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91 Enumerated classes can also be manipulated
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92
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93 >>> contList = [Class(exNs.Africa, graph=g), Class(exNs.NorthAmerica, graph=g)]
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94 >>> EnumeratedClass(members=contList, graph=g) #doctest: +SKIP
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95 { ex:Africa ex:NorthAmerica }
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96
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97 owl:Restrictions can also be instantiated:
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98
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99 >>> Restriction(exNs.hasParent, graph=g, allValuesFrom=exNs.Human) #doctest: +SKIP
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100 ( ex:hasParent ONLY ex:Human )
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101
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102 Restrictions can also be created using Manchester OWL syntax in 'colloquial'
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103 Python
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104 >>> exNs.hasParent | some | Class(exNs.Physician, graph=g) #doctest: +SKIP
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105 ( ex:hasParent SOME ex:Physician )
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106
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107 >>> Property(exNs.hasParent,graph=g) | max | Literal(1) #doctest: +SKIP
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108 ( ex:hasParent MAX 1 )
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109
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110 >>> print(g.serialize(format='pretty-xml')) #doctest: +SKIP
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111
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112 """)
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113
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114 import itertools
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115
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116 from rdflib import (
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117 BNode,
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118 Literal,
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119 Namespace,
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120 RDF,
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121 RDFS,
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122 URIRef,
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123 Variable
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124 )
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125 from rdflib.graph import Graph
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126 from rdflib.collection import Collection
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127 from rdflib.namespace import XSD as _XSD_NS
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128 from rdflib.namespace import NamespaceManager
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129 from rdflib.term import Identifier
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130 from rdflib.util import first
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131
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132 import logging
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133 logger = logging.getLogger(__name__)
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134
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135
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136 """
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137 From: http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/384122
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138
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139 Python has the wonderful "in" operator and it would be nice to have additional
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140 infix operator like this. This recipe shows how (almost) arbitrary infix
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141 operators can be defined.
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142
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143 """
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144
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145 __all__ = [
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146 'OWL_NS',
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147 'nsBinds',
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148 'ACE_NS',
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149 'CLASS_RELATIONS',
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150 'some',
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151 'only',
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152 'max',
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153 'min',
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154 'exactly',
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155 'value',
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156 'PropertyAbstractSyntax',
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157 'AllClasses',
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158 'AllDifferent',
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159 'AllProperties',
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160 'AnnotatableTerms',
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161 'BooleanClass',
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162 'Callable',
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163 'CastClass',
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164 'Class',
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165 'ClassNamespaceFactory',
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166 'classOrIdentifier',
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167 'classOrTerm',
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168 'CommonNSBindings',
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169 'ComponentTerms',
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170 'DeepClassClear',
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171 'EnumeratedClass',
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172 'generateQName',
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173 'GetIdentifiedClasses',
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174 'Individual',
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175 'MalformedClass',
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176 'manchesterSyntax',
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177 'Ontology',
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178 'OWLRDFListProxy',
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179 'Property',
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180 'propertyOrIdentifier',
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181 'Restriction',
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182 'termDeletionDecorator',
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183 ]
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184
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185 # definition of an Infix operator class
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186 # this recipe also works in jython
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187 # calling sequence for the infix is either:
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188 # x |op| y
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189 # or:
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190 # x <<op>> y
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191
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192
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193 class Infix:
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194 def __init__(self, function):
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195 self.function = function
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196
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197 def __ror__(self, other):
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198 return Infix(lambda x, self=self, other=other: self.function(other, x))
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199
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200 def __or__(self, other):
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201 return self.function(other)
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202
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203 def __rlshift__(self, other):
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204 return Infix(lambda x, self=self, other=other: self.function(other, x))
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205
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206 def __rshift__(self, other):
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207 return self.function(other)
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208
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209 def __call__(self, value1, value2):
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210 return self.function(value1, value2)
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211
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212 OWL_NS = Namespace("http://www.w3.org/2002/07/owl#")
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213
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214 nsBinds = {
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215 'skos': 'http://www.w3.org/2004/02/skos/core#',
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216 'rdf': RDF,
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217 'rdfs': RDFS,
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218 'owl': OWL_NS,
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219 'list': URIRef('http://www.w3.org/2000/10/swap/list#'),
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220 'dc': "http://purl.org/dc/elements/1.1/",
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221 }
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222
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223
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224 def generateQName(graph, uri):
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225 prefix, uri, localName = graph.compute_qname(classOrIdentifier(uri))
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226 return ':'.join([prefix, localName])
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227
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228
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229 def classOrTerm(thing):
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230 if isinstance(thing, Class):
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231 return thing.identifier
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232 else:
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233 assert isinstance(thing, (URIRef, BNode, Literal))
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234 return thing
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235
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236
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237 def classOrIdentifier(thing):
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238 if isinstance(thing, (Property, Class)):
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239 return thing.identifier
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240 else:
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241 assert isinstance(thing, (URIRef, BNode)), \
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242 "Expecting a Class, Property, URIRef, or BNode.. not a %s" % thing
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243 return thing
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244
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245
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246 def propertyOrIdentifier(thing):
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247 if isinstance(thing, Property):
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248 return thing.identifier
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249 else:
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250 assert isinstance(thing, URIRef)
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251 return thing
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252
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253
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254 def manchesterSyntax(thing, store, boolean=None, transientList=False):
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255 """
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256 Core serialization
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257 """
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258 assert thing is not None
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259 if boolean:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
260 if transientList:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
261 liveChildren = iter(thing)
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parents:
diff changeset
262 children = [manchesterSyntax(child, store) for child in thing]
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parents:
diff changeset
263 else:
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parents:
diff changeset
264 liveChildren = iter(Collection(store, thing))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
265 children = [manchesterSyntax(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
266 child, store) for child in Collection(store, thing)]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
267 if boolean == OWL_NS.intersectionOf:
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parents:
diff changeset
268 childList = []
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
269 named = []
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parents:
diff changeset
270 for child in liveChildren:
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parents:
diff changeset
271 if isinstance(child, URIRef):
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parents:
diff changeset
272 named.append(child)
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parents:
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273 else:
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parents:
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274 childList.append(child)
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parents:
diff changeset
275 if named:
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parents:
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276 def castToQName(x):
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parents:
diff changeset
277 prefix, uri, localName = store.compute_qname(x)
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parents:
diff changeset
278 return ':'.join([prefix, localName])
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parents:
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279
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parents:
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280 if len(named) > 1:
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parents:
diff changeset
281 prefix = '( ' + ' AND '.join(map(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
282 castToQName, named)) + ' )'
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parents:
diff changeset
283 else:
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284 prefix = manchesterSyntax(named[0], store)
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parents:
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285 if childList:
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parents:
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286 return str(prefix) + ' THAT ' + ' AND '.join(
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parents:
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287 [str(manchesterSyntax(x, store)) for x in childList])
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parents:
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288 else:
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parents:
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289 return prefix
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parents:
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290 else:
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parents:
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291 return '( ' + ' AND '.join(
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parents:
diff changeset
292 [str(c) for c in children]) + ' )'
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parents:
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293 elif boolean == OWL_NS.unionOf:
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parents:
diff changeset
294 return '( ' + ' OR '.join([str(c) for c in children]) + ' )'
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parents:
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295 elif boolean == OWL_NS.oneOf:
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parents:
diff changeset
296 return '{ ' + ' '.join([str(c) for c in children]) + ' }'
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parents:
diff changeset
297 else:
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parents:
diff changeset
298 assert boolean == OWL_NS.complementOf
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
299 elif OWL_NS.Restriction in store.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
300 subject=thing, predicate=RDF.type):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
301 prop = list(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
302 store.objects(subject=thing, predicate=OWL_NS.onProperty))[0]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
303 prefix, uri, localName = store.compute_qname(prop)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
304 propString = ':'.join([prefix, localName])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
305 label = first(store.objects(subject=prop, predicate=RDFS.label))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
306 if label:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
307 propString = "'%s'" % label
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
308 for onlyClass in store.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
309 subject=thing, predicate=OWL_NS.allValuesFrom):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
310 return '( %s ONLY %s )' % (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
311 propString, manchesterSyntax(onlyClass, store))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
312 for val in store.objects(subject=thing, predicate=OWL_NS.hasValue):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
313 return '( %s VALUE %s )' % (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
314 propString,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
315 manchesterSyntax(val.encode('utf-8', 'ignore'), store))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
316 for someClass in store.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
317 subject=thing, predicate=OWL_NS.someValuesFrom):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
318 return '( %s SOME %s )' % (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
319 propString, manchesterSyntax(someClass, store))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
320 cardLookup = {OWL_NS.maxCardinality: 'MAX',
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
321 OWL_NS.minCardinality: 'MIN',
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
322 OWL_NS.cardinality: 'EQUALS'}
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
323 for s, p, o in store.triples_choices(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
324 (thing, list(cardLookup.keys()), None)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
325 return '( %s %s %s )' % (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
326 propString, cardLookup[p], o.encode('utf-8', 'ignore'))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
327 compl = list(store.objects(subject=thing, predicate=OWL_NS.complementOf))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
328 if compl:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
329 return '( NOT %s )' % (manchesterSyntax(compl[0], store))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
330 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
331 prolog = '\n'.join(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
332 ["PREFIX %s: <%s>" % (k, nsBinds[k]) for k in nsBinds])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
333 qstr = \
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
334 prolog + \
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
335 "\nSELECT ?p ?bool WHERE {?class a owl:Class; ?p ?bool ." + \
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
336 "?bool rdf:first ?foo }"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
337 initb = {Variable("?class"): thing}
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
338 for boolProp, col in \
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
339 store.query(qstr, processor="sparql", initBindings=initb):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
340 if not isinstance(thing, URIRef):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
341 return manchesterSyntax(col, store, boolean=boolProp)
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shellac
parents:
diff changeset
342 try:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
343 prefix, uri, localName = store.compute_qname(thing)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
344 qname = ':'.join([prefix, localName])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
345 except Exception:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
346 if isinstance(thing, BNode):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
347 return thing.n3()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
348 return "<" + thing + ">"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
349 logger.debug(list(store.objects(subject=thing, predicate=RDF.type)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
350 raise
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
351 return '[]' # +thing._id.encode('utf-8')+'</em>'
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
352 label = first(Class(thing, graph=store).label)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
353 if label:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
354 return label.encode('utf-8', 'ignore')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
355 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
356 return qname.encode('utf-8', 'ignore')
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shellac
parents:
diff changeset
357
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
358
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
359 def GetIdentifiedClasses(graph):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
360 for c in graph.subjects(predicate=RDF.type, object=OWL_NS.Class):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
361 if isinstance(c, URIRef):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
362 yield Class(c)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
363
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
364
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
365 def termDeletionDecorator(prop):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
366 def someFunc(func):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
367 func.property = prop
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
368 return func
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
369 return someFunc
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
370
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
371
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
372 class TermDeletionHelper:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
373 def __init__(self, prop):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
374 self.prop = prop
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parents:
diff changeset
375
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
376 def __call__(self, f):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
377 def _remover(inst):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
378 inst.graph.remove((inst.identifier, self.prop, None))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
379 return _remover
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
380
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
381
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
382 class Individual(object):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
383 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
384 A typed individual
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
385 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
386 factoryGraph = Graph()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
387
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
388 def serialize(self, graph):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
389 for fact in self.factoryGraph.triples((self.identifier, None, None)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
390 graph.add(fact)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
391
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
392 def __init__(self, identifier=None, graph=None):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
393 self.__identifier = identifier is not None and identifier or BNode()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
394 if graph is None:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
395 self.graph = self.factoryGraph
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
396 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
397 self.graph = graph
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
398 self.qname = None
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
399 if not isinstance(self.identifier, BNode):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
400 try:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
401 prefix, uri, localName = self.graph.compute_qname(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
402 self.identifier)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
403 self.qname = ':'.join([prefix, localName])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
404 except:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
405 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
406
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
407 def clearInDegree(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
408 self.graph.remove((None, None, self.identifier))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
409
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
410 def clearOutDegree(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
411 self.graph.remove((self.identifier, None, None))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
412
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
413 def delete(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
414 self.clearInDegree()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
415 self.clearOutDegree()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
416
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
417 def replace(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
418 for s, p, o in self.graph.triples((None, None, self.identifier)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
419 self.graph.add((s, p, classOrIdentifier(other)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
420 self.delete()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
421
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
422 def _get_type(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
423 for _t in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
424 subject=self.identifier, predicate=RDF.type):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
425 yield _t
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
426
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
427 def _set_type(self, kind):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
428 if not kind:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
429 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
430 if isinstance(kind, (Individual, Identifier)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
431 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
432 (self.identifier, RDF.type, classOrIdentifier(kind)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
433 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
434 for c in kind:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
435 assert isinstance(c, (Individual, Identifier))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
436 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
437 (self.identifier, RDF.type, classOrIdentifier(c)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
438
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
439 @TermDeletionHelper(RDF.type)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
440 def _delete_type(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
441 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
442 >>> g = Graph()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
443 >>> b=Individual(OWL_NS.Restriction,g)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
444 >>> b.type = RDF.Resource
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
445 >>> len(list(b.type))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
446 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
447 >>> del b.type
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
448 >>> len(list(b.type))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
449 0
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
450 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
451 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
452
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
453 type = property(_get_type, _set_type, _delete_type)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
454
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
455 def _get_identifier(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
456 return self.__identifier
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
457
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
458 def _set_identifier(self, i):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
459 assert i
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
460 if i != self.__identifier:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
461 oldStmtsOut = [(p, o) for s, p, o in self.graph.triples(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
462 (self.__identifier, None, None))]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
463 oldStmtsIn = [(s, p) for s, p, o in self.graph.triples(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
464 (None, None, self.__identifier))]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
465 for p1, o1 in oldStmtsOut:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
466 self.graph.remove((self.__identifier, p1, o1))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
467 for s1, p1 in oldStmtsIn:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
468 self.graph.remove((s1, p1, self.__identifier))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
469 self.__identifier = i
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
470 self.graph.addN(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
471 [(i, p1, o1, self.graph) for p1, o1 in oldStmtsOut])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
472 self.graph.addN([(s1, p1, i, self.graph) for s1, p1 in oldStmtsIn])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
473 if not isinstance(i, BNode):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
474 try:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
475 prefix, uri, localName = self.graph.compute_qname(i)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
476 self.qname = ':'.join([prefix, localName])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
477 except:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
478 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
479
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
480 identifier = property(_get_identifier, _set_identifier)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
481
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
482 def _get_sameAs(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
483 for _t in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
484 subject=self.identifier, predicate=OWL_NS.sameAs):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
485 yield _t
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
486
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
487 def _set_sameAs(self, term):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
488 # if not kind:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
489 # return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
490 if isinstance(term, (Individual, Identifier)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
491 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
492 (self.identifier, OWL_NS.sameAs, classOrIdentifier(term)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
493 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
494 for c in term:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
495 assert isinstance(c, (Individual, Identifier))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
496 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
497 (self.identifier, OWL_NS.sameAs, classOrIdentifier(c)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
498
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
499 @TermDeletionHelper(OWL_NS.sameAs)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
500 def _delete_sameAs(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
501 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
502
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
503 sameAs = property(_get_sameAs, _set_sameAs, _delete_sameAs)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
504
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
505
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
506 ACE_NS = Namespace('http://attempto.ifi.uzh.ch/ace_lexicon#')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
507
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
508
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
509 class AnnotatableTerms(Individual):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
510 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
511 Terms in an OWL ontology with rdfs:label and rdfs:comment
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
512 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
513 def __init__(self,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
514 identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
515 graph=None,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
516 nameAnnotation=None,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
517 nameIsLabel=False):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
518 super(AnnotatableTerms, self).__init__(identifier, graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
519 if nameAnnotation:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
520 self.setupACEAnnotations()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
521 self.PN_sgProp.extent = [(self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
522 self.handleAnnotation(nameAnnotation))]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
523 if nameIsLabel:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
524 self.label = [nameAnnotation]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
525
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
526 def handleAnnotation(self, val):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
527 return val if isinstance(val, Literal) else Literal(val)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
528
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
529 def setupACEAnnotations(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
530 self.graph.bind('ace', ACE_NS, override=False)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
531
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
532 # PN_sg singular form of a proper name ()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
533 self.PN_sgProp = Property(ACE_NS.PN_sg,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
534 baseType=OWL_NS.AnnotationProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
535 graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
536
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
537 # CN_sg singular form of a common noun
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
538 self.CN_sgProp = Property(ACE_NS.CN_sg,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
539 baseType=OWL_NS.AnnotationProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
540 graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
541
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
542 # CN_pl plural form of a common noun
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
543 self.CN_plProp = Property(ACE_NS.CN_pl,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
544 baseType=OWL_NS.AnnotationProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
545 graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
546
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
547 # singular form of a transitive verb
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
548 self.TV_sgProp = Property(ACE_NS.TV_sg,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
549 baseType=OWL_NS.AnnotationProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
550 graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
551
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
552 # plural form of a transitive verb
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
553 self.TV_plProp = Property(ACE_NS.TV_pl,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
554 baseType=OWL_NS.AnnotationProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
555 graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
556
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
557 # past participle form a transitive verb
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
558 self.TV_vbgProp = Property(ACE_NS.TV_vbg,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
559 baseType=OWL_NS.AnnotationProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
560 graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
561
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
562 def _get_comment(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
563 for comment in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
564 subject=self.identifier, predicate=RDFS.comment):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
565 yield comment
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
566
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
567 def _set_comment(self, comment):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
568 if not comment:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
569 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
570 if isinstance(comment, Identifier):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
571 self.graph.add((self.identifier, RDFS.comment, comment))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
572 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
573 for c in comment:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
574 self.graph.add((self.identifier, RDFS.comment, c))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
575
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
576 @TermDeletionHelper(RDFS.comment)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
577 def _del_comment(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
578 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
579
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
580 comment = property(_get_comment, _set_comment, _del_comment)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
581
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
582 def _get_seeAlso(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
583 for sA in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
584 subject=self.identifier, predicate=RDFS.seeAlso):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
585 yield sA
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
586
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
587 def _set_seeAlso(self, seeAlsos):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
588 if not seeAlsos:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
589 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
590 for s in seeAlsos:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
591 self.graph.add((self.identifier, RDFS.seeAlso, s))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
592
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
593 @TermDeletionHelper(RDFS.seeAlso)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
594 def _del_seeAlso(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
595 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
596 seeAlso = property(_get_seeAlso, _set_seeAlso, _del_seeAlso)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
597
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
598 def _get_label(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
599 for label in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
600 subject=self.identifier, predicate=RDFS.label):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
601 yield label
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
602
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
603 def _set_label(self, label):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
604 if not label:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
605 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
606 if isinstance(label, Identifier):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
607 self.graph.add((self.identifier, RDFS.label, label))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
608 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
609 for l in label:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
610 self.graph.add((self.identifier, RDFS.label, l))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
611
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
612 @TermDeletionHelper(RDFS.label)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
613 def _delete_label(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
614 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
615 >>> g=Graph()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
616 >>> b=Individual(OWL_NS.Restriction,g)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
617 >>> b.label = Literal('boo')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
618 >>> len(list(b.label))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
619 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
620 >>> del b.label
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
621 >>> len(list(b.label))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
622 0
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
623 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
624 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
625
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
626 label = property(_get_label, _set_label, _delete_label)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
627
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
628
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
629 class Ontology(AnnotatableTerms):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
630 """ The owl ontology metadata"""
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
631 def __init__(self,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
632 identifier=None, imports=None, comment=None, graph=None):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
633 super(Ontology, self).__init__(identifier, graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
634 self.imports = imports and imports or []
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
635 self.comment = comment and comment or []
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
636 if (self.identifier, RDF.type, OWL_NS.Ontology) not in self.graph:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
637 self.graph.add((self.identifier, RDF.type, OWL_NS.Ontology))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
638
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
639 def setVersion(self, version):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
640 self.graph.set((self.identifier, OWL_NS.versionInfo, version))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
641
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
642 def _get_imports(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
643 for owl in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
644 subject=self.identifier, predicate=OWL_NS['imports']):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
645 yield owl
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
646
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
647 def _set_imports(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
648 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
649 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
650 for o in other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
651 self.graph.add((self.identifier, OWL_NS['imports'], o))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
652
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
653 @TermDeletionHelper(OWL_NS['imports'])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
654 def _del_imports(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
655 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
656
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
657 imports = property(_get_imports, _set_imports, _del_imports)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
658
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
659
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
660 def AllClasses(graph):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
661 prevClasses = set()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
662 for c in graph.subjects(predicate=RDF.type, object=OWL_NS.Class):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
663 if c not in prevClasses:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
664 prevClasses.add(c)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
665 yield Class(c)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
666
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
667
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
668 def AllProperties(graph):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
669 prevProps = set()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
670 for s, p, o in graph.triples_choices(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
671 (None, RDF.type, [OWL_NS.SymmetricProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
672 OWL_NS.FunctionalProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
673 OWL_NS.InverseFunctionalProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
674 OWL_NS.TransitiveProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
675 OWL_NS.DatatypeProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
676 OWL_NS.ObjectProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
677 OWL_NS.AnnotationProperty])):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
678 if o in [OWL_NS.SymmetricProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
679 OWL_NS.InverseFunctionalProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
680 OWL_NS.TransitiveProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
681 OWL_NS.ObjectProperty]:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
682 bType = OWL_NS.ObjectProperty
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
683 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
684 bType = OWL_NS.DatatypeProperty
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
685 if s not in prevProps:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
686 prevProps.add(s)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
687 yield Property(s,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
688 graph=graph,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
689 baseType=bType)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
690
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
691
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
692 class ClassNamespaceFactory(Namespace):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
693 def term(self, name):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
694 return Class(URIRef(self + name))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
695
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
696 def __getitem__(self, key, default=None):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
697 return self.term(key)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
698
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
699 def __getattr__(self, name):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
700 if name.startswith("__"): # ignore any special Python names!
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
701 raise AttributeError
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
702 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
703 return self.term(name)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
704
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
705 CLASS_RELATIONS = set(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
706 OWL_NS.resourceProperties
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
707 ).difference([OWL_NS.onProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
708 OWL_NS.allValuesFrom,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
709 OWL_NS.hasValue,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
710 OWL_NS.someValuesFrom,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
711 OWL_NS.inverseOf,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
712 OWL_NS.imports,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
713 OWL_NS.versionInfo,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
714 OWL_NS.backwardCompatibleWith,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
715 OWL_NS.incompatibleWith,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
716 OWL_NS.unionOf,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
717 OWL_NS.intersectionOf,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
718 OWL_NS.oneOf])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
719
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
720
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
721 def ComponentTerms(cls):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
722 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
723 Takes a Class instance and returns a generator over the classes that
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
724 are involved in its definition, ignoring unnamed classes
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
725 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
726 if OWL_NS.Restriction in cls.type:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
727 try:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
728 cls = CastClass(cls, Individual.factoryGraph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
729 for s, p, innerClsId in cls.factoryGraph.triples_choices(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
730 (cls.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
731 [OWL_NS.allValuesFrom,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
732 OWL_NS.someValuesFrom],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
733 None)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
734 innerCls = Class(innerClsId, skipOWLClassMembership=True)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
735 if isinstance(innerClsId, BNode):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
736 for _c in ComponentTerms(innerCls):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
737 yield _c
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
738 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
739 yield innerCls
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
740 except:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
741 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
742 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
743 cls = CastClass(cls, Individual.factoryGraph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
744 if isinstance(cls, BooleanClass):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
745 for _cls in cls:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
746 _cls = Class(_cls, skipOWLClassMembership=True)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
747 if isinstance(_cls.identifier, BNode):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
748 for _c in ComponentTerms(_cls):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
749 yield _c
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
750 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
751 yield _cls
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
752 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
753 for innerCls in cls.subClassOf:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
754 if isinstance(innerCls.identifier, BNode):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
755 for _c in ComponentTerms(innerCls):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
756 yield _c
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
757 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
758 yield innerCls
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
759 for s, p, o in cls.factoryGraph.triples_choices(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
760 (classOrIdentifier(cls),
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
761 CLASS_RELATIONS,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
762 None)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
763 ):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
764 if isinstance(o, BNode):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
765 for _c in ComponentTerms(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
766 CastClass(o, Individual.factoryGraph)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
767 yield _c
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
768 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
769 yield innerCls
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
770
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
771
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
772 def DeepClassClear(classToPrune):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
773 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
774 Recursively clear the given class, continuing
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
775 where any related class is an anonymous class
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
776
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
777 >>> EX = Namespace('http://example.com/')
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parents:
diff changeset
778 >>> namespace_manager = NamespaceManager(Graph())
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parents:
diff changeset
779 >>> namespace_manager.bind('ex', EX, override=False)
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parents:
diff changeset
780 >>> namespace_manager.bind('owl', OWL_NS, override=False)
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parents:
diff changeset
781 >>> g = Graph()
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parents:
diff changeset
782 >>> g.namespace_manager = namespace_manager
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parents:
diff changeset
783 >>> Individual.factoryGraph = g
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parents:
diff changeset
784 >>> classB = Class(EX.B)
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parents:
diff changeset
785 >>> classC = Class(EX.C)
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parents:
diff changeset
786 >>> classD = Class(EX.D)
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parents:
diff changeset
787 >>> classE = Class(EX.E)
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parents:
diff changeset
788 >>> classF = Class(EX.F)
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parents:
diff changeset
789 >>> anonClass = EX.someProp | some | classD #doctest: +SKIP
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parents:
diff changeset
790 >>> classF += anonClass #doctest: +SKIP
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parents:
diff changeset
791 >>> list(anonClass.subClassOf) #doctest: +SKIP
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parents:
diff changeset
792 [Class: ex:F ]
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parents:
diff changeset
793 >>> classA = classE | classF | anonClass #doctest: +SKIP
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parents:
diff changeset
794 >>> classB += classA #doctest: +SKIP
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parents:
diff changeset
795 >>> classA.equivalentClass = [Class()] #doctest: +SKIP
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parents:
diff changeset
796 >>> classB.subClassOf = [EX.someProp | some | classC] #doctest: +SKIP
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parents:
diff changeset
797 >>> classA #doctest: +SKIP
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parents:
diff changeset
798 ( ex:E OR ex:F OR ( ex:someProp SOME ex:D ) )
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parents:
diff changeset
799 >>> DeepClassClear(classA) #doctest: +SKIP
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parents:
diff changeset
800 >>> classA #doctest: +SKIP
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parents:
diff changeset
801 ( )
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parents:
diff changeset
802 >>> list(anonClass.subClassOf) #doctest: +SKIP
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parents:
diff changeset
803 []
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parents:
diff changeset
804 >>> classB #doctest: +SKIP
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parents:
diff changeset
805 Class: ex:B SubClassOf: ( ex:someProp SOME ex:C )
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parents:
diff changeset
806
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parents:
diff changeset
807 >>> otherClass = classD | anonClass #doctest: +SKIP
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parents:
diff changeset
808 >>> otherClass #doctest: +SKIP
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parents:
diff changeset
809 ( ex:D OR ( ex:someProp SOME ex:D ) )
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parents:
diff changeset
810 >>> DeepClassClear(otherClass) #doctest: +SKIP
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parents:
diff changeset
811 >>> otherClass #doctest: +SKIP
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parents:
diff changeset
812 ( )
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parents:
diff changeset
813 >>> otherClass.delete() #doctest: +SKIP
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parents:
diff changeset
814 >>> list(g.triples((otherClass.identifier, None, None))) #doctest: +SKIP
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parents:
diff changeset
815 []
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parents:
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816 """
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parents:
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817 def deepClearIfBNode(_class):
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parents:
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818 if isinstance(classOrIdentifier(_class), BNode):
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parents:
diff changeset
819 DeepClassClear(_class)
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parents:
diff changeset
820 classToPrune = CastClass(classToPrune, Individual.factoryGraph)
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parents:
diff changeset
821 for c in classToPrune.subClassOf:
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parents:
diff changeset
822 deepClearIfBNode(c)
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parents:
diff changeset
823 classToPrune.graph.remove((classToPrune.identifier, RDFS.subClassOf, None))
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parents:
diff changeset
824 for c in classToPrune.equivalentClass:
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parents:
diff changeset
825 deepClearIfBNode(c)
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parents:
diff changeset
826 classToPrune.graph.remove(
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parents:
diff changeset
827 (classToPrune.identifier, OWL_NS.equivalentClass, None))
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parents:
diff changeset
828 inverseClass = classToPrune.complementOf
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parents:
diff changeset
829 if inverseClass:
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parents:
diff changeset
830 classToPrune.graph.remove(
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parents:
diff changeset
831 (classToPrune.identifier, OWL_NS.complementOf, None))
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parents:
diff changeset
832 deepClearIfBNode(inverseClass)
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parents:
diff changeset
833 if isinstance(classToPrune, BooleanClass):
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parents:
diff changeset
834 for c in classToPrune:
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parents:
diff changeset
835 deepClearIfBNode(c)
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parents:
diff changeset
836 classToPrune.clear()
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parents:
diff changeset
837 classToPrune.graph.remove((classToPrune.identifier,
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parents:
diff changeset
838 classToPrune._operator,
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parents:
diff changeset
839 None))
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parents:
diff changeset
840
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841
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parents:
diff changeset
842 class MalformedClass(Exception):
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parents:
diff changeset
843 def __init__(self, msg):
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parents:
diff changeset
844 self.msg = msg
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parents:
diff changeset
845
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parents:
diff changeset
846 def __repr__(self):
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parents:
diff changeset
847 return self.msg
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parents:
diff changeset
848
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parents:
diff changeset
849
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parents:
diff changeset
850 def CastClass(c, graph=None):
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parents:
diff changeset
851 graph = graph is None and c.factoryGraph or graph
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parents:
diff changeset
852 for kind in graph.objects(subject=classOrIdentifier(c),
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parents:
diff changeset
853 predicate=RDF.type):
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parents:
diff changeset
854 if kind == OWL_NS.Restriction:
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parents:
diff changeset
855 kwArgs = {'identifier': classOrIdentifier(c),
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parents:
diff changeset
856 'graph': graph}
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parents:
diff changeset
857 for s, p, o in graph.triples((classOrIdentifier(c),
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parents:
diff changeset
858 None,
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parents:
diff changeset
859 None)):
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parents:
diff changeset
860 if p != RDF.type:
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parents:
diff changeset
861 if p == OWL_NS.onProperty:
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parents:
diff changeset
862 kwArgs['onProperty'] = o
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parents:
diff changeset
863 else:
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parents:
diff changeset
864 if p not in Restriction.restrictionKinds:
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parents:
diff changeset
865 continue
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parents:
diff changeset
866 kwArgs[str(p.split(OWL_NS)[-1])] = o
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parents:
diff changeset
867 if not set([str(i.split(OWL_NS)[-1])
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parents:
diff changeset
868 for i in Restriction.restrictionKinds]
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parents:
diff changeset
869 ).intersection(kwArgs):
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parents:
diff changeset
870 raise MalformedClass("Malformed owl:Restriction")
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parents:
diff changeset
871 return Restriction(**kwArgs)
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parents:
diff changeset
872 else:
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parents:
diff changeset
873 for s, p, o in graph.triples_choices((classOrIdentifier(c),
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
874 [OWL_NS.intersectionOf,
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parents:
diff changeset
875 OWL_NS.unionOf,
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parents:
diff changeset
876 OWL_NS.oneOf],
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parents:
diff changeset
877 None)):
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parents:
diff changeset
878 if p == OWL_NS.oneOf:
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parents:
diff changeset
879 return EnumeratedClass(classOrIdentifier(c), graph=graph)
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parents:
diff changeset
880 else:
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parents:
diff changeset
881 return BooleanClass(
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parents:
diff changeset
882 classOrIdentifier(c), operator=p, graph=graph)
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parents:
diff changeset
883 # assert (classOrIdentifier(c),RDF.type,OWL_NS.Class) in graph
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parents:
diff changeset
884 return Class(
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parents:
diff changeset
885 classOrIdentifier(c), graph=graph, skipOWLClassMembership=True)
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parents:
diff changeset
886
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parents:
diff changeset
887
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parents:
diff changeset
888 class Class(AnnotatableTerms):
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parents:
diff changeset
889 """
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parents:
diff changeset
890 'General form' for classes:
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parents:
diff changeset
891
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parents:
diff changeset
892 The Manchester Syntax (supported in Protege) is used as the basis for the
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parents:
diff changeset
893 form of this class
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parents:
diff changeset
894
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parents:
diff changeset
895 See: http://owl-workshop.man.ac.uk/acceptedLong/submission_9.pdf:
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parents:
diff changeset
896
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parents:
diff changeset
897 [Annotation]
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parents:
diff changeset
898 ‘Class:’ classID {Annotation
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parents:
diff changeset
899 ( (‘SubClassOf:’ ClassExpression)
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parents:
diff changeset
900 | (‘EquivalentTo’ ClassExpression)
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parents:
diff changeset
901 | (’DisjointWith’ ClassExpression)) }
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shellac
parents:
diff changeset
902
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
903 Appropriate excerpts from OWL Reference:
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parents:
diff changeset
904
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parents:
diff changeset
905 ".. Subclass axioms provide us with partial definitions: they represent
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
906 necessary but not sufficient conditions for establishing class
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
907 membership of an individual."
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parents:
diff changeset
908
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parents:
diff changeset
909 ".. A class axiom may contain (multiple) owl:equivalentClass statements"
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parents:
diff changeset
910
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parents:
diff changeset
911 "..A class axiom may also contain (multiple) owl:disjointWith statements.."
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parents:
diff changeset
912
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parents:
diff changeset
913 "..An owl:complementOf property links a class to precisely one class
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parents:
diff changeset
914 description."
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parents:
diff changeset
915
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parents:
diff changeset
916 """
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parents:
diff changeset
917 def _serialize(self, graph):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
918 for cl in self.subClassOf:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
919 CastClass(cl, self.graph).serialize(graph)
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parents:
diff changeset
920 for cl in self.equivalentClass:
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parents:
diff changeset
921 CastClass(cl, self.graph).serialize(graph)
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parents:
diff changeset
922 for cl in self.disjointWith:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
923 CastClass(cl, self.graph).serialize(graph)
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parents:
diff changeset
924 if self.complementOf:
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parents:
diff changeset
925 CastClass(self.complementOf, self.graph).serialize(graph)
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parents:
diff changeset
926
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parents:
diff changeset
927 def serialize(self, graph):
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parents:
diff changeset
928 for fact in self.graph.triples((self.identifier, None, None)):
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parents:
diff changeset
929 graph.add(fact)
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parents:
diff changeset
930 self._serialize(graph)
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parents:
diff changeset
931
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parents:
diff changeset
932 def setupNounAnnotations(self, nounAnnotations):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
933 if isinstance(nounAnnotations, tuple):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
934 CN_sgProp, CN_plProp = nounAnnotations
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parents:
diff changeset
935 else:
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parents:
diff changeset
936 CN_sgProp = nounAnnotations
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parents:
diff changeset
937 CN_plProp = nounAnnotations
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parents:
diff changeset
938
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parents:
diff changeset
939 if CN_sgProp:
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parents:
diff changeset
940 self.CN_sgProp.extent = [(self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
941 self.handleAnnotation(CN_sgProp))]
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parents:
diff changeset
942 if CN_plProp:
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parents:
diff changeset
943 self.CN_plProp.extent = [(self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
944 self.handleAnnotation(CN_plProp))]
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parents:
diff changeset
945
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parents:
diff changeset
946 def __init__(self, identifier=None, subClassOf=None, equivalentClass=None,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
947 disjointWith=None, complementOf=None, graph=None,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
948 skipOWLClassMembership=False, comment=None,
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parents:
diff changeset
949 nounAnnotations=None,
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parents:
diff changeset
950 nameAnnotation=None,
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parents:
diff changeset
951 nameIsLabel=False):
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parents:
diff changeset
952 super(Class, self).__init__(identifier, graph,
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parents:
diff changeset
953 nameAnnotation, nameIsLabel)
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parents:
diff changeset
954
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parents:
diff changeset
955 if nounAnnotations:
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parents:
diff changeset
956 self.setupNounAnnotations(nounAnnotations)
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parents:
diff changeset
957 if not skipOWLClassMembership \
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parents:
diff changeset
958 and (self.identifier, RDF.type, OWL_NS.Class) \
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parents:
diff changeset
959 not in self.graph and \
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parents:
diff changeset
960 (self.identifier, RDF.type, OWL_NS.Restriction) \
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parents:
diff changeset
961 not in self.graph:
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parents:
diff changeset
962 self.graph.add((self.identifier, RDF.type, OWL_NS.Class))
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parents:
diff changeset
963
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parents:
diff changeset
964 self.subClassOf = subClassOf and subClassOf or []
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parents:
diff changeset
965 self.equivalentClass = equivalentClass and equivalentClass or []
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parents:
diff changeset
966 self.disjointWith = disjointWith and disjointWith or []
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parents:
diff changeset
967 if complementOf:
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parents:
diff changeset
968 self.complementOf = complementOf
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parents:
diff changeset
969 self.comment = comment and comment or []
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parents:
diff changeset
970
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parents:
diff changeset
971 def _get_extent(self, graph=None):
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parents:
diff changeset
972 for member in (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
973 graph is None and self.graph or graph).subjects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
974 predicate=RDF.type, object=self.identifier):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
975 yield member
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shellac
parents:
diff changeset
976
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shellac
parents:
diff changeset
977 def _set_extent(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
978 if not other:
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parents:
diff changeset
979 return
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parents:
diff changeset
980 for m in other:
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parents:
diff changeset
981 self.graph.add((classOrIdentifier(m), RDF.type, self.identifier))
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shellac
parents:
diff changeset
982
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parents:
diff changeset
983 @TermDeletionHelper(RDF.type)
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shellac
parents:
diff changeset
984 def _del_type(self):
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shellac
parents:
diff changeset
985 pass
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shellac
parents:
diff changeset
986
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shellac
parents:
diff changeset
987 extent = property(_get_extent, _set_extent, _del_type)
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shellac
parents:
diff changeset
988
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parents:
diff changeset
989 def _get_annotation(self, term=RDFS.label):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
990 for annotation in self.graph.objects(subject=self, predicate=term):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
991 yield annotation
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shellac
parents:
diff changeset
992
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parents:
diff changeset
993 annotation = property(_get_annotation, lambda x: x)
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parents:
diff changeset
994
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
995 def _get_extentQuery(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
996 return (Variable('CLASS'), RDF.type, self.identifier)
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parents:
diff changeset
997
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
998 def _set_extentQuery(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
999 pass
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shellac
parents:
diff changeset
1000
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1001 extentQuery = property(_get_extentQuery, _set_extentQuery)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1002
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1003 def __hash__(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1004 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1005 >>> b=Class(OWL_NS.Restriction)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1006 >>> c=Class(OWL_NS.Restriction)
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shellac
parents:
diff changeset
1007 >>> len(set([b,c]))
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parents:
diff changeset
1008 1
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parents:
diff changeset
1009 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1010 return hash(self.identifier)
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parents:
diff changeset
1011
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parents:
diff changeset
1012 def __eq__(self, other):
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parents:
diff changeset
1013 assert isinstance(other, Class), repr(other)
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parents:
diff changeset
1014 return self.identifier == other.identifier
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parents:
diff changeset
1015
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parents:
diff changeset
1016 def __iadd__(self, other):
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parents:
diff changeset
1017 assert isinstance(other, Class)
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parents:
diff changeset
1018 other.subClassOf = [self]
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parents:
diff changeset
1019 return self
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parents:
diff changeset
1020
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parents:
diff changeset
1021 def __isub__(self, other):
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parents:
diff changeset
1022 assert isinstance(other, Class)
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parents:
diff changeset
1023 self.graph.remove(
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parents:
diff changeset
1024 (classOrIdentifier(other), RDFS.subClassOf, self.identifier))
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parents:
diff changeset
1025 return self
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parents:
diff changeset
1026
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parents:
diff changeset
1027 def __invert__(self):
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parents:
diff changeset
1028 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1029 Shorthand for Manchester syntax's not operator
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shellac
parents:
diff changeset
1030 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1031 return Class(complementOf=self)
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parents:
diff changeset
1032
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parents:
diff changeset
1033 def __or__(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1034 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1035 Construct an anonymous class description consisting of the union of
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1036 this class and 'other' and return it
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1037 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1038 return BooleanClass(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1039 operator=OWL_NS.unionOf, members=[self, other], graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1040
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parents:
diff changeset
1041 def __and__(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1042 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1043 Construct an anonymous class description consisting of the
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1044 intersection of this class and 'other' and return it
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1045
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1046 >>> exNs = Namespace('http://example.com/')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1047 >>> namespace_manager = NamespaceManager(Graph())
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1048 >>> namespace_manager.bind('ex', exNs, override=False)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1049 >>> namespace_manager.bind('owl', OWL_NS, override=False)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1050 >>> g = Graph()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1051 >>> g.namespace_manager = namespace_manager
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1052
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parents:
diff changeset
1053 Chaining 3 intersections
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1054
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1055 >>> female = Class(exNs.Female, graph=g)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1056 >>> human = Class(exNs.Human, graph=g)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1057 >>> youngPerson = Class(exNs.YoungPerson, graph=g)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1058 >>> youngWoman = female & human & youngPerson
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1059 >>> youngWoman #doctest: +SKIP
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1060 ex:YoungPerson THAT ( ex:Female AND ex:Human )
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1061 >>> isinstance(youngWoman, BooleanClass)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1062 True
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parents:
diff changeset
1063 >>> isinstance(youngWoman.identifier, BNode)
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parents:
diff changeset
1064 True
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parents:
diff changeset
1065 """
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parents:
diff changeset
1066 return BooleanClass(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1067 operator=OWL_NS.intersectionOf,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1068 members=[self, other], graph=self.graph)
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parents:
diff changeset
1069
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parents:
diff changeset
1070 def _get_subClassOf(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1071 for anc in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1072 subject=self.identifier, predicate=RDFS.subClassOf):
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parents:
diff changeset
1073 yield Class(anc,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1074 graph=self.graph,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1075 skipOWLClassMembership=True)
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parents:
diff changeset
1076
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parents:
diff changeset
1077 def _set_subClassOf(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1078 if not other:
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parents:
diff changeset
1079 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1080 for sc in other:
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parents:
diff changeset
1081 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1082 (self.identifier, RDFS.subClassOf, classOrIdentifier(sc)))
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parents:
diff changeset
1083
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parents:
diff changeset
1084 @TermDeletionHelper(RDFS.subClassOf)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1085 def _del_subClassOf(self):
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parents:
diff changeset
1086 pass
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parents:
diff changeset
1087
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parents:
diff changeset
1088 subClassOf = property(_get_subClassOf, _set_subClassOf, _del_subClassOf)
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parents:
diff changeset
1089
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parents:
diff changeset
1090 def _get_equivalentClass(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1091 for ec in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1092 subject=self.identifier, predicate=OWL_NS.equivalentClass):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1093 yield Class(ec, graph=self.graph)
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parents:
diff changeset
1094
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parents:
diff changeset
1095 def _set_equivalentClass(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1096 if not other:
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parents:
diff changeset
1097 return
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parents:
diff changeset
1098 for sc in other:
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parents:
diff changeset
1099 self.graph.add((self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1100 OWL_NS.equivalentClass, classOrIdentifier(sc)))
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parents:
diff changeset
1101
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parents:
diff changeset
1102 @TermDeletionHelper(OWL_NS.equivalentClass)
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parents:
diff changeset
1103 def _del_equivalentClass(self):
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parents:
diff changeset
1104 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1105
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1106 equivalentClass = property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1107 _get_equivalentClass, _set_equivalentClass, _del_equivalentClass)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1108
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parents:
diff changeset
1109 def _get_disjointWith(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1110 for dc in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1111 subject=self.identifier, predicate=OWL_NS.disjointWith):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1112 yield Class(dc, graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1113
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1114 def _set_disjointWith(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1115 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1116 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1117 for c in other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1118 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1119 (self.identifier, OWL_NS.disjointWith, classOrIdentifier(c)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1120
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1121 @TermDeletionHelper(OWL_NS.disjointWith)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1122 def _del_disjointWith(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1123 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1124
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1125 disjointWith = property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1126 _get_disjointWith, _set_disjointWith, _del_disjointWith)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1127
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1128 def _get_complementOf(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1129 comp = list(self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1130 subject=self.identifier, predicate=OWL_NS.complementOf))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1131 if not comp:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1132 return None
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1133 elif len(comp) == 1:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1134 return Class(comp[0], graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1135 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1136 raise Exception(len(comp))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1137
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1138 def _set_complementOf(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1139 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1140 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1141 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1142 (self.identifier, OWL_NS.complementOf, classOrIdentifier(other)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1143
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1144 @TermDeletionHelper(OWL_NS.complementOf)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1145 def _del_complementOf(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1146 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1147
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1148 complementOf = property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1149 _get_complementOf, _set_complementOf, _del_complementOf)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1150
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1151 def _get_parents(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1152 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1153 computed attributes that returns a generator over taxonomic 'parents'
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1154 by disjunction, conjunction, and subsumption
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1155
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1156 >>> from rdflib.util import first
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1157 >>> exNs = Namespace('http://example.com/')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1158 >>> namespace_manager = NamespaceManager(Graph())
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1159 >>> namespace_manager.bind('ex', exNs, override=False)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1160 >>> namespace_manager.bind('owl', OWL_NS, override=False)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1161 >>> g = Graph()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1162 >>> g.namespace_manager = namespace_manager
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1163 >>> Individual.factoryGraph = g
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1164 >>> brother = Class(exNs.Brother)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1165 >>> sister = Class(exNs.Sister)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1166 >>> sibling = brother | sister
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1167 >>> sibling.identifier = exNs.Sibling
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1168 >>> sibling #doctest: +SKIP
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1169 ( ex:Brother OR ex:Sister )
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1170 >>> first(brother.parents) #doctest: +SKIP
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1171 Class: ex:Sibling EquivalentTo: ( ex:Brother OR ex:Sister )
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1172 >>> parent = Class(exNs.Parent)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1173 >>> male = Class(exNs.Male)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1174 >>> father = parent & male
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1175 >>> father.identifier = exNs.Father
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1176 >>> list(father.parents) #doctest: +SKIP
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1177 [Class: ex:Parent , Class: ex:Male ]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1178
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1179 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1180 for parent in itertools.chain(self.subClassOf,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1181 self.equivalentClass):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1182 yield parent
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1183
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1184 link = first(self.factoryGraph.subjects(RDF.first, self.identifier))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1185 if link:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1186 listSiblings = list(self.factoryGraph.transitive_subjects(RDF.rest,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1187 link))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1188 if listSiblings:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1189 collectionHead = listSiblings[-1]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1190 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1191 collectionHead = link
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1192 for disjCls in self.factoryGraph.subjects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1193 OWL_NS.unionOf, collectionHead):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1194 if isinstance(disjCls, URIRef):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1195 yield Class(disjCls, skipOWLClassMembership=True)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1196 for rdfList in self.factoryGraph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1197 self.identifier, OWL_NS.intersectionOf):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1198 for member in OWLRDFListProxy([rdfList], graph=self.factoryGraph):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1199 if isinstance(member, URIRef):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1200 yield Class(member, skipOWLClassMembership=True)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1201
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1202 parents = property(_get_parents)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1203
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1204 def isPrimitive(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1205 if (self.identifier, RDF.type, OWL_NS.Restriction) in self.graph:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1206 return False
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1207 # sc = list(self.subClassOf)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1208 ec = list(self.equivalentClass)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1209 for boolClass, p, rdfList in self.graph.triples_choices(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1210 (self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1211 [OWL_NS.intersectionOf,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1212 OWL_NS.unionOf],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1213 None)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1214 ec.append(manchesterSyntax(rdfList, self.graph, boolean=p))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1215 for e in ec:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1216 return False
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1217 if self.complementOf:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1218 return False
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1219 return True
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1220
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1221 def subSumpteeIds(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1222 for s in self.graph.subjects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1223 predicate=RDFS.subClassOf, object=self.identifier):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1224 yield s
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1225
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1226 # def __iter__(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1227 # for s in self.graph.subjects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1228 # predicate=RDFS.subClassOf,object=self.identifier):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1229 # yield Class(s,skipOWLClassMembership=True)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1230
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1231 def __repr__(self, full=False, normalization=True):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1232 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1233 Returns the Manchester Syntax equivalent for this class
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1234 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1235 exprs = []
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1236 sc = list(self.subClassOf)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1237 ec = list(self.equivalentClass)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1238 for boolClass, p, rdfList in self.graph.triples_choices(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1239 (self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1240 [OWL_NS.intersectionOf,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1241 OWL_NS.unionOf],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1242 None)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1243 ec.append(manchesterSyntax(rdfList, self.graph, boolean=p))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1244 dc = list(self.disjointWith)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1245 c = self.complementOf
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1246 if c:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1247 dc.append(c)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1248 klassKind = ''
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1249 label = list(self.graph.objects(self.identifier, RDFS.label))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1250 label = label and '(' + label[0] + ')' or ''
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1251 if sc:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1252 if full:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1253 scJoin = '\n '
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1254 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1255 scJoin = ', '
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1256 necStatements = [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1257 isinstance(s, Class) and isinstance(self.identifier, BNode) and
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1258 repr(CastClass(s, self.graph)) or
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1259 # repr(BooleanClass(classOrIdentifier(s),
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1260 # operator=None,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1261 # graph=self.graph)) or
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1262 manchesterSyntax(classOrIdentifier(s), self.graph) for s in sc]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1263 if necStatements:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1264 klassKind = "Primitive Type %s" % label
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1265 exprs.append("SubClassOf: %s" % scJoin.join(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1266 [str(n) for n in necStatements]))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1267 if full:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1268 exprs[-1] = "\n " + exprs[-1]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1269 if ec:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1270 nec_SuffStatements = [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1271 isinstance(s, str) and s or
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1272 manchesterSyntax(classOrIdentifier(s), self.graph) for s in ec]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1273 if nec_SuffStatements:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1274 klassKind = "A Defined Class %s" % label
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1275 exprs.append("EquivalentTo: %s" % ', '.join(nec_SuffStatements))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1276 if full:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1277 exprs[-1] = "\n " + exprs[-1]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1278 if dc:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1279 exprs.append("DisjointWith %s\n" % '\n '.join(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1280 [manchesterSyntax(classOrIdentifier(s), self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1281 for s in dc]))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1282 if full:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1283 exprs[-1] = "\n " + exprs[-1]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1284 descr = list(self.graph.objects(self.identifier, RDFS.comment))
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parents:
diff changeset
1285 if full and normalization:
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parents:
diff changeset
1286 klassDescr = klassKind and '\n ## %s ##' % klassKind +\
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1287 (descr and "\n %s" % descr[0] or '') + \
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1288 ' . '.join(exprs) or ' . '.join(exprs)
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parents:
diff changeset
1289 else:
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parents:
diff changeset
1290 klassDescr = full and (descr and "\n %s" %
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parents:
diff changeset
1291 descr[0] or '') or '' + ' . '.join(exprs)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1292 return (isinstance(self.identifier, BNode)
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parents:
diff changeset
1293 and "Some Class "
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parents:
diff changeset
1294 or "Class: %s " % self.qname) + klassDescr
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parents:
diff changeset
1295
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parents:
diff changeset
1296
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parents:
diff changeset
1297 class OWLRDFListProxy(object):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1298 def __init__(self, rdfList, members=None, graph=None):
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parents:
diff changeset
1299 if graph:
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parents:
diff changeset
1300 self.graph = graph
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parents:
diff changeset
1301 members = members and members or []
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parents:
diff changeset
1302 if rdfList:
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parents:
diff changeset
1303 self._rdfList = Collection(self.graph, rdfList[0])
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parents:
diff changeset
1304 for member in members:
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parents:
diff changeset
1305 if member not in self._rdfList:
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parents:
diff changeset
1306 self._rdfList.append(classOrIdentifier(member))
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parents:
diff changeset
1307 else:
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parents:
diff changeset
1308 self._rdfList = Collection(self.graph, BNode(),
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parents:
diff changeset
1309 [classOrIdentifier(m) for m in members])
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parents:
diff changeset
1310 self.graph.add(
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parents:
diff changeset
1311 (self.identifier, self._operator, self._rdfList.uri))
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diff changeset
1312
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parents:
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1313 def __eq__(self, other):
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parents:
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1314 """
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parents:
diff changeset
1315 Equivalence of boolean class constructors is determined by
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
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1316 equivalence of its members
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diff changeset
1317 """
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parents:
diff changeset
1318 assert isinstance(other, Class), repr(other) + repr(type(other))
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parents:
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1319 if isinstance(other, BooleanClass):
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parents:
diff changeset
1320 length = len(self)
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1321 if length != len(other):
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parents:
diff changeset
1322 return False
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parents:
diff changeset
1323 else:
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parents:
diff changeset
1324 for idx in range(length):
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parents:
diff changeset
1325 if self[idx] != other[idx]:
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parents:
diff changeset
1326 return False
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parents:
diff changeset
1327 return True
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parents:
diff changeset
1328 else:
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parents:
diff changeset
1329 return self.identifier == other.identifier
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parents:
diff changeset
1330
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parents:
diff changeset
1331 # Redirect python list accessors to the underlying Collection instance
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parents:
diff changeset
1332 def __len__(self):
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parents:
diff changeset
1333 return len(self._rdfList)
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parents:
diff changeset
1334
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1335 def index(self, item):
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parents:
diff changeset
1336 return self._rdfList.index(classOrIdentifier(item))
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1337
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parents:
diff changeset
1338 def __getitem__(self, key):
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parents:
diff changeset
1339 return self._rdfList[key]
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parents:
diff changeset
1340
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parents:
diff changeset
1341 def __setitem__(self, key, value):
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parents:
diff changeset
1342 self._rdfList[key] = classOrIdentifier(value)
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parents:
diff changeset
1343
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parents:
diff changeset
1344 def __delitem__(self, key):
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parents:
diff changeset
1345 del self._rdfList[key]
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parents:
diff changeset
1346
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parents:
diff changeset
1347 def clear(self):
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parents:
diff changeset
1348 self._rdfList.clear()
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parents:
diff changeset
1349
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parents:
diff changeset
1350 def __iter__(self):
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parents:
diff changeset
1351 for item in self._rdfList:
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parents:
diff changeset
1352 yield item
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parents:
diff changeset
1353
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parents:
diff changeset
1354 def __contains__(self, item):
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parents:
diff changeset
1355 for i in self._rdfList:
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parents:
diff changeset
1356 if i == classOrIdentifier(item):
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parents:
diff changeset
1357 return 1
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parents:
diff changeset
1358 return 0
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parents:
diff changeset
1359
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parents:
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1360 def append(self, item):
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parents:
diff changeset
1361 self._rdfList.append(item)
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diff changeset
1362
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diff changeset
1363 def __iadd__(self, other):
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parents:
diff changeset
1364 self._rdfList.append(classOrIdentifier(other))
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parents:
diff changeset
1365 return self
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parents:
diff changeset
1366
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diff changeset
1367
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parents:
diff changeset
1368 class EnumeratedClass(OWLRDFListProxy, Class):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1369 py3compat.format_doctest_out("""
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1370 Class for owl:oneOf forms:
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parents:
diff changeset
1371
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parents:
diff changeset
1372 OWL Abstract Syntax is used
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parents:
diff changeset
1373
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parents:
diff changeset
1374 axiom ::= 'EnumeratedClass('
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1375 classID ['Deprecated'] { annotation } { individualID } ')'
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parents:
diff changeset
1376
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parents:
diff changeset
1377
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parents:
diff changeset
1378 >>> exNs = Namespace('http://example.com/')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1379 >>> namespace_manager = NamespaceManager(Graph())
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parents:
diff changeset
1380 >>> namespace_manager.bind('ex', exNs, override=False)
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parents:
diff changeset
1381 >>> namespace_manager.bind('owl', OWL_NS, override=False)
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parents:
diff changeset
1382 >>> g = Graph()
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parents:
diff changeset
1383 >>> g.namespace_manager = namespace_manager
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parents:
diff changeset
1384 >>> Individual.factoryGraph = g
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parents:
diff changeset
1385 >>> ogbujiBros = EnumeratedClass(exNs.ogbujicBros,
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parents:
diff changeset
1386 ... members=[exNs.chime,
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parents:
diff changeset
1387 ... exNs.uche,
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parents:
diff changeset
1388 ... exNs.ejike])
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parents:
diff changeset
1389 >>> ogbujiBros #doctest: +SKIP
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shellac
parents:
diff changeset
1390 { ex:chime ex:uche ex:ejike }
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parents:
diff changeset
1391 >>> col = Collection(g, first(
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parents:
diff changeset
1392 ... g.objects(predicate=OWL_NS.oneOf, subject=ogbujiBros.identifier)))
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parents:
diff changeset
1393 >>> [g.qname(item) for item in col]
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shellac
parents:
diff changeset
1394 [%(u)s'ex:chime', %(u)s'ex:uche', %(u)s'ex:ejike']
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parents:
diff changeset
1395 >>> print(g.serialize(format='n3')) #doctest: +SKIP
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shellac
parents:
diff changeset
1396 @prefix ex: <http://example.com/> .
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shellac
parents:
diff changeset
1397 @prefix owl: <http://www.w3.org/2002/07/owl#> .
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parents:
diff changeset
1398 @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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parents:
diff changeset
1399 <BLANKLINE>
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shellac
parents:
diff changeset
1400 ex:ogbujicBros a owl:Class;
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shellac
parents:
diff changeset
1401 owl:oneOf ( ex:chime ex:uche ex:ejike ) .
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parents:
diff changeset
1402 <BLANKLINE>
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parents:
diff changeset
1403 <BLANKLINE>
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parents:
diff changeset
1404 """)
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parents:
diff changeset
1405 _operator = OWL_NS.oneOf
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parents:
diff changeset
1406
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diff changeset
1407 def isPrimitive(self):
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parents:
diff changeset
1408 return False
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diff changeset
1409
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diff changeset
1410 def __init__(self, identifier=None, members=None, graph=None):
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1411 Class.__init__(self, identifier, graph=graph)
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1412 members = members and members or []
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1413 rdfList = list(self.graph.objects(
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1414 predicate=OWL_NS.oneOf, subject=self.identifier))
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1415 OWLRDFListProxy.__init__(self, rdfList, members)
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1416
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1417 def __repr__(self):
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1418 """
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1419 Returns the Manchester Syntax equivalent for this class
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1420 """
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1421 return manchesterSyntax(
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1422 self._rdfList.uri, self.graph, boolean=self._operator)
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1423
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1424 def serialize(self, graph):
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1425 clonedList = Collection(graph, BNode())
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1426 for cl in self._rdfList:
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1427 clonedList.append(cl)
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1428 CastClass(cl, self.graph).serialize(graph)
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1429
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1430 graph.add((self.identifier, self._operator, clonedList.uri))
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1431 for s, p, o in self.graph.triples((self.identifier, None, None)):
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1432 if p != self._operator:
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1433 graph.add((s, p, o))
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1434 self._serialize(graph)
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1435
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1436 BooleanPredicates = [OWL_NS.intersectionOf, OWL_NS.unionOf]
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1437
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1438
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1439 class BooleanClassExtentHelper:
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1440 """
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1441 >>> testGraph = Graph()
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1442 >>> Individual.factoryGraph = testGraph
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1443 >>> EX = Namespace("http://example.com/")
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1444 >>> namespace_manager = NamespaceManager(Graph())
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1445 >>> namespace_manager.bind('ex', EX, override=False)
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1446 >>> testGraph.namespace_manager = namespace_manager
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1447 >>> fire = Class(EX.Fire)
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1448 >>> water = Class(EX.Water)
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1449 >>> testClass = BooleanClass(members=[fire, water])
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1450 >>> testClass2 = BooleanClass(
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1451 ... operator=OWL_NS.unionOf, members=[fire, water])
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1452 >>> for c in BooleanClass.getIntersections():
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1453 ... print(c) #doctest: +SKIP
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1454 ( ex:Fire AND ex:Water )
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1455 >>> for c in BooleanClass.getUnions():
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1456 ... print(c) #doctest: +SKIP
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1457 ( ex:Fire OR ex:Water )
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1458 """
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1459 def __init__(self, operator):
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1460 self.operator = operator
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1461
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1462 def __call__(self, f):
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1463 def _getExtent():
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1464 for c in Individual.factoryGraph.subjects(self.operator):
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1465 yield BooleanClass(c, operator=self.operator)
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1466 return _getExtent
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1467
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1468
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1469 class Callable():
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1470 def __init__(self, anycallable):
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1471 self.__call__ = anycallable
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1472
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1473
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1474 class BooleanClass(OWLRDFListProxy, Class):
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1475 """
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1476 See: http://www.w3.org/TR/owl-ref/#Boolean
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1477
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1478 owl:complementOf is an attribute of Class, however
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1479
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1480 """
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1481 @BooleanClassExtentHelper(OWL_NS.intersectionOf)
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1482 @Callable
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1483 def getIntersections():
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1484 pass
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1485 getIntersections = Callable(getIntersections)
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1486
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1487 @BooleanClassExtentHelper(OWL_NS.unionOf)
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1488 @Callable
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1489 def getUnions():
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1490 pass
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1491 getUnions = Callable(getUnions)
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1492
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1493 def __init__(self, identifier=None, operator=OWL_NS.intersectionOf,
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1494 members=None, graph=None):
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1495 if operator is None:
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1496 props = []
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1497 for s, p, o in graph.triples_choices((identifier,
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1498 [OWL_NS.intersectionOf,
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1499 OWL_NS.unionOf],
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1500 None)):
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1501 props.append(p)
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1502 operator = p
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1503 assert len(props) == 1, repr(props)
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1504 Class.__init__(self, identifier, graph=graph)
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1505 assert operator in [OWL_NS.intersectionOf,
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1506 OWL_NS.unionOf], str(operator)
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1507 self._operator = operator
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1508 rdfList = list(
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1509 self.graph.objects(predicate=operator, subject=self.identifier))
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1510 assert not members or not rdfList, \
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1511 "This is a previous boolean class description!" + \
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1512 repr(Collection(self.graph, rdfList[0]).n3())
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1513 OWLRDFListProxy.__init__(self, rdfList, members)
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1514
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1515 def copy(self):
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1516 """
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1517 Create a copy of this class
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1518 """
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1519 copyOfClass = BooleanClass(
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1520 operator=self._operator, members=list(self), graph=self.graph)
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1521 return copyOfClass
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1522
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1523 def serialize(self, graph):
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1524 clonedList = Collection(graph, BNode())
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1525 for cl in self._rdfList:
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1526 clonedList.append(cl)
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1527 CastClass(cl, self.graph).serialize(graph)
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1528
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1529 graph.add((self.identifier, self._operator, clonedList.uri))
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1530
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1531 for s, p, o in self.graph.triples((self.identifier, None, None)):
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1532 if p != self._operator:
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1533 graph.add((s, p, o))
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1534 self._serialize(graph)
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1535
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1536 def isPrimitive(self):
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1537 return False
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diff changeset
1538
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diff changeset
1539 def changeOperator(self, newOperator):
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parents:
diff changeset
1540 """
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parents:
diff changeset
1541 Converts a unionOf / intersectionOf class expression into one
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parents:
diff changeset
1542 that instead uses the given operator
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diff changeset
1543
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1544
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diff changeset
1545 >>> testGraph = Graph()
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parents:
diff changeset
1546 >>> Individual.factoryGraph = testGraph
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parents:
diff changeset
1547 >>> EX = Namespace("http://example.com/")
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parents:
diff changeset
1548 >>> namespace_manager = NamespaceManager(Graph())
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parents:
diff changeset
1549 >>> namespace_manager.bind('ex', EX, override=False)
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parents:
diff changeset
1550 >>> testGraph.namespace_manager = namespace_manager
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parents:
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1551 >>> fire = Class(EX.Fire)
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parents:
diff changeset
1552 >>> water = Class(EX.Water)
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parents:
diff changeset
1553 >>> testClass = BooleanClass(members=[fire,water])
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parents:
diff changeset
1554 >>> testClass #doctest: +SKIP
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parents:
diff changeset
1555 ( ex:Fire AND ex:Water )
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parents:
diff changeset
1556 >>> testClass.changeOperator(OWL_NS.unionOf)
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parents:
diff changeset
1557 >>> testClass #doctest: +SKIP
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parents:
diff changeset
1558 ( ex:Fire OR ex:Water )
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parents:
diff changeset
1559 >>> try: testClass.changeOperator(OWL_NS.unionOf)
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parents:
diff changeset
1560 ... except Exception%s: print(e)
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parents:
diff changeset
1561 The new operator is already being used!
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1562
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diff changeset
1563 """ % 'as e' if py3compat.PY3 else ', e'
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parents:
diff changeset
1564 assert newOperator != self._operator, \
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parents:
diff changeset
1565 "The new operator is already being used!"
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diff changeset
1566 self.graph.remove((self.identifier, self._operator, self._rdfList.uri))
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diff changeset
1567 self.graph.add((self.identifier, newOperator, self._rdfList.uri))
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diff changeset
1568 self._operator = newOperator
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1569
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1570 def __repr__(self):
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1571 """
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1572 Returns the Manchester Syntax equivalent for this class
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1573 """
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1574 return manchesterSyntax(
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diff changeset
1575 self._rdfList.uri, self.graph, boolean=self._operator)
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diff changeset
1576
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diff changeset
1577 def __or__(self, other):
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parents:
diff changeset
1578 """
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diff changeset
1579 Adds other to the list and returns self
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diff changeset
1580 """
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diff changeset
1581 assert self._operator == OWL_NS.unionOf
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parents:
diff changeset
1582 self._rdfList.append(classOrIdentifier(other))
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parents:
diff changeset
1583 return self
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1584
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1585
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1586 def AllDifferent(members):
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1587 """
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diff changeset
1588 DisjointClasses(' description description { description } ')'
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1589
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1590 """
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parents:
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1591 pass
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diff changeset
1592
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1593
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1594 class Restriction(Class):
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1595 """
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1596 restriction ::= 'restriction('
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diff changeset
1597 datavaluedPropertyID dataRestrictionComponent
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diff changeset
1598 { dataRestrictionComponent } ')'
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diff changeset
1599 | 'restriction(' individualvaluedPropertyID
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diff changeset
1600 individualRestrictionComponent
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1601 { individualRestrictionComponent } ')'
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1602 """
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1603
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1604 restrictionKinds = [OWL_NS.allValuesFrom,
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diff changeset
1605 OWL_NS.someValuesFrom,
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diff changeset
1606 OWL_NS.hasValue,
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diff changeset
1607 OWL_NS.maxCardinality,
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diff changeset
1608 OWL_NS.minCardinality]
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diff changeset
1609
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diff changeset
1610 def __init__(self,
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diff changeset
1611 onProperty,
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diff changeset
1612 graph=Graph(),
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diff changeset
1613 allValuesFrom=None,
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diff changeset
1614 someValuesFrom=None,
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diff changeset
1615 value=None,
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diff changeset
1616 cardinality=None,
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diff changeset
1617 maxCardinality=None,
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diff changeset
1618 minCardinality=None,
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diff changeset
1619 identifier=None):
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diff changeset
1620 super(Restriction, self).__init__(identifier,
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diff changeset
1621 graph=graph,
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diff changeset
1622 skipOWLClassMembership=True)
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diff changeset
1623 if (self.identifier,
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diff changeset
1624 OWL_NS.onProperty,
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diff changeset
1625 propertyOrIdentifier(onProperty)) not in graph:
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parents:
diff changeset
1626 graph.add((self.identifier, OWL_NS.onProperty,
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parents:
diff changeset
1627 propertyOrIdentifier(onProperty)))
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parents:
diff changeset
1628 self.onProperty = onProperty
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diff changeset
1629 restrTypes = [
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diff changeset
1630 (allValuesFrom, OWL_NS.allValuesFrom),
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parents:
diff changeset
1631 (someValuesFrom, OWL_NS.someValuesFrom),
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parents:
diff changeset
1632 (value, OWL_NS.hasValue),
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diff changeset
1633 (cardinality, OWL_NS.cardinality),
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diff changeset
1634 (maxCardinality, OWL_NS.maxCardinality),
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diff changeset
1635 (minCardinality, OWL_NS.minCardinality)]
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parents:
diff changeset
1636 validRestrProps = [(i, oTerm) for (i, oTerm) in restrTypes if i]
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parents:
diff changeset
1637 assert len(validRestrProps)
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diff changeset
1638 restrictionRange, restrictionType = validRestrProps.pop()
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parents:
diff changeset
1639 self.restrictionType = restrictionType
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diff changeset
1640 if isinstance(restrictionRange, Identifier):
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parents:
diff changeset
1641 self.restrictionRange = restrictionRange
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diff changeset
1642 elif isinstance(restrictionRange, Class):
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parents:
diff changeset
1643 self.restrictionRange = classOrIdentifier(restrictionRange)
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diff changeset
1644 else:
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diff changeset
1645 self.restrictionRange = first(self.graph.objects(self.identifier,
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diff changeset
1646 restrictionType))
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diff changeset
1647 if (self.identifier,
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parents:
diff changeset
1648 restrictionType,
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diff changeset
1649 self.restrictionRange) not in self.graph:
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diff changeset
1650 self.graph.add(
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diff changeset
1651 (self.identifier, restrictionType, self.restrictionRange))
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diff changeset
1652 assert self.restrictionRange is not None, Class(self.identifier)
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diff changeset
1653 if (self.identifier, RDF.type, OWL_NS.Restriction) not in self.graph:
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diff changeset
1654 self.graph.add((self.identifier, RDF.type, OWL_NS.Restriction))
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parents:
diff changeset
1655 self.graph.remove((self.identifier, RDF.type, OWL_NS.Class))
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diff changeset
1656
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diff changeset
1657 @py3compat.format_doctest_out
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diff changeset
1658 def serialize(self, graph):
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diff changeset
1659 """
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parents:
diff changeset
1660 >>> g1 = Graph()
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diff changeset
1661 >>> g2 = Graph()
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parents:
diff changeset
1662 >>> EX = Namespace("http://example.com/")
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parents:
diff changeset
1663 >>> namespace_manager = NamespaceManager(g1)
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parents:
diff changeset
1664 >>> namespace_manager.bind('ex', EX, override=False)
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parents:
diff changeset
1665 >>> namespace_manager = NamespaceManager(g2)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1666 >>> namespace_manager.bind('ex', EX, override=False)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1667 >>> Individual.factoryGraph = g1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1668 >>> prop = Property(EX.someProp, baseType=OWL_NS.DatatypeProperty)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1669 >>> restr1 = (Property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1670 ... EX.someProp,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1671 ... baseType=OWL_NS.DatatypeProperty)) | some | (Class(EX.Foo))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1672 >>> restr1 #doctest: +SKIP
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1673 ( ex:someProp SOME ex:Foo )
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1674 >>> restr1.serialize(g2)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1675 >>> Individual.factoryGraph = g2
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1676 >>> list(Property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1677 ... EX.someProp,baseType=None).type
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1678 ... ) #doctest: +NORMALIZE_WHITESPACE +SKIP
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1679 [rdflib.term.URIRef(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1680 %(u)s'http://www.w3.org/2002/07/owl#DatatypeProperty')]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1681 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1682 Property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1683 self.onProperty, graph=self.graph, baseType=None).serialize(graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1684 for s, p, o in self.graph.triples((self.identifier, None, None)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1685 graph.add((s, p, o))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1686 if p in [OWL_NS.allValuesFrom, OWL_NS.someValuesFrom]:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1687 CastClass(o, self.graph).serialize(graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1688
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1689 def isPrimitive(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1690 return False
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1691
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1692 def __hash__(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1693 return hash((self.onProperty, self.restrictionRange))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1694
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1695 def __eq__(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1696 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1697 Equivalence of restrictions is determined by equivalence of the
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1698 property in question and the restriction 'range'
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1699 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1700 assert isinstance(other, Class), repr(other) + repr(type(other))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1701 if isinstance(other, Restriction):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1702 return other.onProperty == self.onProperty and \
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1703 other.restrictionRange == self.restrictionRange
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1704 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1705 return False
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1706
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1707 def _get_onProperty(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1708 return list(self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1709 subject=self.identifier, predicate=OWL_NS.onProperty))[0]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1710
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1711 def _set_onProperty(self, prop):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1712 triple = (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1713 self.identifier, OWL_NS.onProperty, propertyOrIdentifier(prop))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1714 if not prop:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1715 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1716 elif triple in self.graph:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1717 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1718 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1719 self.graph.set(triple)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1720
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1721 @TermDeletionHelper(OWL_NS.onProperty)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1722 def _del_onProperty(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1723 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1724
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1725 onProperty = property(_get_onProperty, _set_onProperty, _del_onProperty)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1726
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1727 def _get_allValuesFrom(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1728 for i in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1729 subject=self.identifier, predicate=OWL_NS.allValuesFrom):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1730 return Class(i, graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1731 return None
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1732
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1733 def _set_allValuesFrom(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1734 triple = (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1735 self.identifier, OWL_NS.allValuesFrom, classOrIdentifier(other))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1736 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1737 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1738 elif triple in self.graph:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1739 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1740 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1741 self.graph.set(triple)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1742
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1743 @TermDeletionHelper(OWL_NS.allValuesFrom)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1744 def _del_allValuesFrom(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1745 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1746
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1747 allValuesFrom = property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1748 _get_allValuesFrom, _set_allValuesFrom, _del_allValuesFrom)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1749
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1750 def _get_someValuesFrom(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1751 for i in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1752 subject=self.identifier, predicate=OWL_NS.someValuesFrom):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1753 return Class(i, graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1754 return None
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1755
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1756 def _set_someValuesFrom(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1757 triple = (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1758 self.identifier, OWL_NS.someValuesFrom, classOrIdentifier(other))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1759 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1760 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1761 elif triple in self.graph:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1762 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1763 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1764 self.graph.set(triple)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1765
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1766 @TermDeletionHelper(OWL_NS.someValuesFrom)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1767 def _del_someValuesFrom(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1768 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1769
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1770 someValuesFrom = property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1771 _get_someValuesFrom, _set_someValuesFrom, _del_someValuesFrom)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1772
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1773 def _get_hasValue(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1774 for i in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1775 subject=self.identifier, predicate=OWL_NS.hasValue):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1776 return Class(i, graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1777 return None
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1778
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1779 def _set_hasValue(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1780 triple = (self.identifier, OWL_NS.hasValue, classOrIdentifier(other))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1781 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1782 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1783 elif triple in self.graph:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1784 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1785 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1786 self.graph.set(triple)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1787
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1788 @TermDeletionHelper(OWL_NS.hasValue)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1789 def _del_hasValue(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1790 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1791
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1792 hasValue = property(_get_hasValue, _set_hasValue, _del_hasValue)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1793
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1794 def _get_cardinality(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1795 for i in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1796 subject=self.identifier, predicate=OWL_NS.cardinality):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1797 return Class(i, graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1798 return None
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1799
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1800 def _set_cardinality(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1801 triple = (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1802 self.identifier, OWL_NS.cardinality, classOrIdentifier(other))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1803 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1804 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1805 elif triple in self.graph:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1806 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1807 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1808 self.graph.set(triple)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1809
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1810 @TermDeletionHelper(OWL_NS.cardinality)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1811 def _del_cardinality(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1812 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1813
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1814 cardinality = property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1815 _get_cardinality, _set_cardinality, _del_cardinality)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1816
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1817 def _get_maxCardinality(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1818 for i in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1819 subject=self.identifier, predicate=OWL_NS.maxCardinality):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1820 return Class(i, graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1821 return None
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1822
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1823 def _set_maxCardinality(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1824 triple = (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1825 self.identifier, OWL_NS.maxCardinality, classOrIdentifier(other))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1826 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1827 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1828 elif triple in self.graph:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1829 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1830 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1831 self.graph.set(triple)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1832
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1833 @TermDeletionHelper(OWL_NS.maxCardinality)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1834 def _del_maxCardinality(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1835 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1836
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1837 maxCardinality = property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1838 _get_maxCardinality, _set_maxCardinality, _del_maxCardinality)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1839
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1840 def _get_minCardinality(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1841 for i in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1842 subject=self.identifier, predicate=OWL_NS.minCardinality):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1843 return Class(i, graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1844 return None
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1845
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1846 def _set_minCardinality(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1847 triple = (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1848 self.identifier, OWL_NS.minCardinality, classOrIdentifier(other))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1849 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1850 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1851 elif triple in self.graph:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1852 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1853 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1854 self.graph.set(triple)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1855
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1856 @TermDeletionHelper(OWL_NS.minCardinality)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1857 def _del_minCardinality(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1858 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1859
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1860 minCardinality = property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1861 _get_minCardinality, _set_minCardinality, _del_minCardinality)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1862
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1863 def restrictionKind(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1864 for p in self.graph.triple_choices((self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1865 self.restrictionKinds,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1866 None)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1867 return p.split(OWL_NS)[-1]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1868 raise
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1869
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1870 def __repr__(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1871 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1872 Returns the Manchester Syntax equivalent for this restriction
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1873 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1874 return manchesterSyntax(self.identifier, self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1875
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1876 ### Infix Operators ###
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1877
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1878 some = Infix(lambda prop, _class: Restriction(prop, graph=_class.graph,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1879 someValuesFrom=_class))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1880 only = Infix(lambda prop, _class: Restriction(prop, graph=_class.graph,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1881 allValuesFrom=_class))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1882 max = Infix(lambda prop, _class: Restriction(prop, graph=prop.graph,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1883 maxCardinality=_class))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1884 min = Infix(lambda prop, _class: Restriction(prop, graph=prop.graph,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1885 minCardinality=_class))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1886 exactly = Infix(lambda prop, _class: Restriction(prop, graph=prop.graph,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1887 cardinality=_class))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1888 value = Infix(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1889 lambda prop, _class: Restriction(prop, graph=prop.graph, value=_class))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1890
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1891 PropertyAbstractSyntax =\
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1892 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1893 %s( %s { %s }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1894 %s
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1895 { 'super(' datavaluedPropertyID ')'} ['Functional']
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1896 { domain( %s ) } { range( %s ) } )"""
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1897
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1898
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1899 class Property(AnnotatableTerms):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1900 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1901 axiom ::= 'DatatypeProperty(' datavaluedPropertyID ['Deprecated']
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1902 { annotation }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1903 { 'super(' datavaluedPropertyID ')'} ['Functional']
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1904 { 'domain(' description ')' } { 'range(' dataRange ')' } ')'
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1905 | 'ObjectProperty(' individualvaluedPropertyID ['Deprecated']
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1906 { annotation }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1907 { 'super(' individualvaluedPropertyID ')' }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1908 [ 'inverseOf(' individualvaluedPropertyID ')' ] [ 'Symmetric' ]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1909 [ 'Functional' | 'InverseFunctional' |
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1910 'Functional' 'InverseFunctional' |
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1911 'Transitive' ]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1912 { 'domain(' description ')' } { 'range(' description ')' } ')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1913 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1914
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1915 def setupVerbAnnotations(self, verbAnnotations):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1916 if isinstance(verbAnnotations, tuple):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1917 TV_sgProp, TV_plProp, TV_vbg = verbAnnotations
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1918 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1919 TV_sgProp = verbAnnotations
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1920 TV_plProp = verbAnnotations
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1921 TV_vbg = verbAnnotations
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1922 if TV_sgProp:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1923 self.TV_sgProp.extent = [(self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1924 self.handleAnnotation(TV_sgProp))]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1925 if TV_plProp:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1926 self.TV_plProp.extent = [(self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1927 self.handleAnnotation(TV_plProp))]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1928 if TV_vbg:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1929 self.TV_vbgProp.extent = [(self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1930 self.handleAnnotation(TV_vbg))]
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parents:
diff changeset
1931
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1932 def __init__(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1933 self, identifier=None, graph=None, baseType=OWL_NS.ObjectProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1934 subPropertyOf=None, domain=None, range=None, inverseOf=None,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1935 otherType=None, equivalentProperty=None,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1936 comment=None,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1937 verbAnnotations=None,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1938 nameAnnotation=None,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1939 nameIsLabel=False):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1940 super(Property, self).__init__(identifier, graph,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1941 nameAnnotation, nameIsLabel)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1942 if verbAnnotations:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1943 self.setupVerbAnnotations(verbAnnotations)
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parents:
diff changeset
1944
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1945 assert not isinstance(self.identifier, BNode)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1946 if baseType is None:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1947 # None give, determine via introspection
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parents:
diff changeset
1948 self._baseType = first(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1949 Individual(self.identifier, graph=self.graph).type)
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parents:
diff changeset
1950 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1951 if (self.identifier, RDF.type, baseType) not in self.graph:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1952 self.graph.add((self.identifier, RDF.type, baseType))
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parents:
diff changeset
1953 self._baseType = baseType
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parents:
diff changeset
1954 self.subPropertyOf = subPropertyOf
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1955 self.inverseOf = inverseOf
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1956 self.domain = domain
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1957 self.range = range
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1958 self.comment = comment and comment or []
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parents:
diff changeset
1959
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parents:
diff changeset
1960 def serialize(self, graph):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1961 for fact in self.graph.triples((self.identifier, None, None)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1962 graph.add(fact)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1963 for p in itertools.chain(self.subPropertyOf,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1964 self.inverseOf):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1965 p.serialize(graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1966 for c in itertools.chain(self.domain,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1967 self.range):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1968 CastClass(c, self.graph).serialize(graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1969
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1970 def _get_extent(self, graph=None):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1971 for triple in (graph is None and self.graph or graph).triples(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1972 (None, self.identifier, None)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1973 yield triple
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1974
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1975 def _set_extent(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1976 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1977 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1978 for subj, obj in other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1979 self.graph.add((subj, self.identifier, obj))
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parents:
diff changeset
1980
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1981 extent = property(_get_extent, _set_extent)
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shellac
parents:
diff changeset
1982
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1983 def __repr__(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1984 rt = []
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
diff changeset
1985 if OWL_NS.ObjectProperty in self.type:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1986 rt.append('ObjectProperty( %s annotation(%s)'
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1987 % (self.qname, first(self.comment)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1988 and first(self.comment) or ''))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1989 if first(self.inverseOf):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1990 twoLinkInverse = first(first(self.inverseOf).inverseOf)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1991 if twoLinkInverse \
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1992 and twoLinkInverse.identifier == self.identifier:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1993 inverseRepr = first(self.inverseOf).qname
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1994 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1995 inverseRepr = repr(first(self.inverseOf))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1996 rt.append(" inverseOf( %s )%s" % (
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1997 inverseRepr,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1998 OWL_NS.SymmetricProperty in self.type
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
1999 and ' Symmetric'
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2000 or ''))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2001 for s, p, roleType in self.graph.triples_choices(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2002 (self.identifier,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2003 RDF.type,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2004 [OWL_NS.FunctionalProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2005 OWL_NS.InverseFunctionalProperty,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2006 OWL_NS.TransitiveProperty])):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2007 rt.append(str(roleType.split(OWL_NS)[-1]))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2008 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2009 rt.append('DatatypeProperty( %s %s'
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2010 % (self.qname, first(self.comment)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2011 and first(self.comment)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2012 or ''))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2013 for s, p, roleType in self.graph.triples((
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2014 self.identifier, RDF.type, OWL_NS.FunctionalProperty)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2015 rt.append(' Functional')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2016
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2017 def canonicalName(term, g):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2018 normalizedName = classOrIdentifier(term)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2019 if isinstance(normalizedName, BNode):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2020 return term
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2021 elif normalizedName.startswith(_XSD_NS):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2022 return str(term)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2023 elif first(g.triples_choices((
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2024 normalizedName,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2025 [OWL_NS.unionOf,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2026 OWL_NS.intersectionOf], None))):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2027 return repr(term)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2028 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2029 return str(term.qname)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2030 rt.append(' '.join([" super( %s )" % canonicalName(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2031 superP, self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2032 for superP in self.subPropertyOf]))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2033 rt.append(' '.join([" domain( %s )" % canonicalName(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2034 domain, self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2035 for domain in self.domain]))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2036 rt.append(' '.join([" range( %s )" % canonicalName(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2037 range, self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2038 for range in self.range]))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2039 rt = '\n'.join([expr for expr in rt if expr])
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2040 rt += '\n)'
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2041 return str(rt).encode('utf-8')
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2042
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2043 def _get_subPropertyOf(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2044 for anc in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2045 subject=self.identifier, predicate=RDFS.subPropertyOf):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2046 yield Property(anc, graph=self.graph, baseType=None)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2047
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2048 def _set_subPropertyOf(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2049 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2050 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2051 for sP in other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2052 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2053 (self.identifier, RDFS.subPropertyOf, classOrIdentifier(sP)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2054
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2055 @TermDeletionHelper(RDFS.subPropertyOf)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2056 def _del_subPropertyOf(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2057 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2058
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2059 subPropertyOf = property(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2060 _get_subPropertyOf, _set_subPropertyOf, _del_subPropertyOf)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2061
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2062 def _get_inverseOf(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2063 for anc in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2064 subject=self.identifier, predicate=OWL_NS.inverseOf):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2065 yield Property(anc, graph=self.graph, baseType=None)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2066
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2067 def _set_inverseOf(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2068 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2069 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2070 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2071 (self.identifier, OWL_NS.inverseOf, classOrIdentifier(other)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2072
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2073 @TermDeletionHelper(OWL_NS.inverseOf)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2074 def _del_inverseOf(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2075 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2076
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2077 inverseOf = property(_get_inverseOf, _set_inverseOf, _del_inverseOf)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2078
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2079 def _get_domain(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2080 for dom in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2081 subject=self.identifier, predicate=RDFS.domain):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2082 yield Class(dom, graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2083
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2084 def _set_domain(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2085 if not other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2086 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2087 if isinstance(other, (Individual, Identifier)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2088 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2089 (self.identifier, RDFS.domain, classOrIdentifier(other)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2090 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2091 for dom in other:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2092 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2093 (self.identifier, RDFS.domain, classOrIdentifier(dom)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2094
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2095 @TermDeletionHelper(RDFS.domain)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2096 def _del_domain(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2097 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2098
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2099 domain = property(_get_domain, _set_domain, _del_domain)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2100
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2101 def _get_range(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2102 for ran in self.graph.objects(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2103 subject=self.identifier, predicate=RDFS.range):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2104 yield Class(ran, graph=self.graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2105
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2106 def _set_range(self, ranges):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2107 if not ranges:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2108 return
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2109 if isinstance(ranges, (Individual, Identifier)):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2110 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2111 (self.identifier, RDFS.range, classOrIdentifier(ranges)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2112 else:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2113 for range in ranges:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2114 self.graph.add(
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2115 (self.identifier, RDFS.range, classOrIdentifier(range)))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2116
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2117 @TermDeletionHelper(RDFS.range)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2118 def _del_range(self):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2119 pass
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2120
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2121 range = property(_get_range, _set_range, _del_range)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2122
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2123 def replace(self, other):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2124 # extension = []
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2125 for s, p, o in self.extent:
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2126 self.graph.add((s, propertyOrIdentifier(other), o))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2127 self.graph.remove((None, self.identifier, None))
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2128
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2129
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2130 def CommonNSBindings(graph, additionalNS={}):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2131 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2132 Takes a graph and binds the common namespaces (rdf,rdfs, & owl)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2133 """
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2134 namespace_manager = NamespaceManager(graph)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2135 namespace_manager.bind('rdfs', RDFS)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2136 namespace_manager.bind('rdf', RDF)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2137 namespace_manager.bind('owl', OWL_NS)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2138 for prefix, uri in list(additionalNS.items()):
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2139 namespace_manager.bind(prefix, uri, override=False)
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2140 graph.namespace_manager = namespace_manager
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2141
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2142
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2143 def test():
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2144 import doctest
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2145 doctest.testmod()
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2146
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2147 if __name__ == '__main__':
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff changeset
2148 test()