Mercurial > repos > shellac > guppy_basecaller
annotate env/lib/python3.7/site-packages/rdflib/plugins/parsers/rdfxml.py @ 0:26e78fe6e8c4 draft
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author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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1 """ |
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2 An RDF/XML parser for RDFLib |
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3 """ |
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4 |
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5 from xml.sax import make_parser |
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6 from xml.sax.handler import ErrorHandler |
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7 from xml.sax.saxutils import handler, quoteattr, escape |
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8 from urllib.parse import urljoin, urldefrag |
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9 |
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10 from rdflib.namespace import RDF, is_ncname |
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11 from rdflib.term import URIRef |
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12 from rdflib.term import BNode |
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13 from rdflib.term import Literal |
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14 from rdflib.exceptions import ParserError, Error |
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15 from rdflib.parser import Parser |
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16 |
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17 __all__ = ['create_parser', 'BagID', 'ElementHandler', |
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18 'RDFXMLHandler', 'RDFXMLParser'] |
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19 |
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20 RDFNS = RDF |
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21 |
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22 # http://www.w3.org/TR/rdf-syntax-grammar/#eventterm-attribute-URI |
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23 # A mapping from unqualified terms to their qualified version. |
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24 UNQUALIFIED = {"about": RDF.about, |
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25 "ID": RDF.ID, |
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26 "type": RDF.type, |
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27 "resource": RDF.resource, |
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28 "parseType": RDF.parseType} |
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29 |
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30 # http://www.w3.org/TR/rdf-syntax-grammar/#coreSyntaxTerms |
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31 CORE_SYNTAX_TERMS = [RDF.RDF, RDF.ID, RDF.about, RDF.parseType, |
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32 RDF.resource, RDF.nodeID, RDF.datatype] |
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33 |
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34 # http://www.w3.org/TR/rdf-syntax-grammar/#syntaxTerms |
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35 SYNTAX_TERMS = CORE_SYNTAX_TERMS + [RDF.Description, RDF.li] |
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36 |
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37 # http://www.w3.org/TR/rdf-syntax-grammar/#oldTerms |
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38 OLD_TERMS = [ |
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39 URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#aboutEach"), |
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40 URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#aboutEachPrefix"), |
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41 URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#bagID")] |
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42 |
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43 NODE_ELEMENT_EXCEPTIONS = CORE_SYNTAX_TERMS + [RDF.li, ] + OLD_TERMS |
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44 NODE_ELEMENT_ATTRIBUTES = [RDF.ID, RDF.nodeID, RDF.about] |
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45 |
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46 PROPERTY_ELEMENT_EXCEPTIONS = \ |
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47 CORE_SYNTAX_TERMS + [RDF.Description, ] + OLD_TERMS |
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48 PROPERTY_ATTRIBUTE_EXCEPTIONS = \ |
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49 CORE_SYNTAX_TERMS + [RDF.Description, RDF.li] + OLD_TERMS |
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50 PROPERTY_ELEMENT_ATTRIBUTES = [RDF.ID, RDF.resource, RDF.nodeID] |
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51 |
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52 XMLNS = "http://www.w3.org/XML/1998/namespace" |
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53 BASE = (XMLNS, "base") |
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54 LANG = (XMLNS, "lang") |
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55 |
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56 |
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57 class BagID(URIRef): |
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58 __slots__ = ['li'] |
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59 |
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60 def __init__(self, val): |
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61 super(URIRef, self).__init__(val) |
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62 self.li = 0 |
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63 |
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64 def next_li(self): |
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65 self.li += 1 |
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66 return RDFNS[self.li] |
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67 |
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68 |
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69 class ElementHandler(object): |
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70 __slots__ = ['start', 'char', 'end', 'li', 'id', |
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71 'base', 'subject', 'predicate', 'object', |
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72 'list', 'language', 'datatype', 'declared', 'data'] |
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73 |
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74 def __init__(self): |
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75 self.start = None |
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76 self.char = None |
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77 self.end = None |
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78 self.li = 0 |
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79 self.id = None |
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80 self.base = None |
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81 self.subject = None |
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82 self.object = None |
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83 self.list = None |
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84 self.language = None |
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85 self.datatype = None |
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86 self.declared = None |
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87 self.data = None |
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88 |
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89 def next_li(self): |
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90 self.li += 1 |
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91 return RDFNS[self.li] |
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92 |
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93 |
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94 class RDFXMLHandler(handler.ContentHandler): |
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95 |
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96 def __init__(self, store): |
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97 self.store = store |
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98 self.preserve_bnode_ids = False |
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99 self.reset() |
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100 |
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101 def reset(self): |
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102 document_element = ElementHandler() |
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103 document_element.start = self.document_element_start |
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104 document_element.end = lambda name, qname: None |
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105 self.stack = [None, document_element, ] |
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106 self.ids = {} # remember IDs we have already seen |
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107 self.bnode = {} |
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108 self._ns_contexts = [{}] # contains uri -> prefix dicts |
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109 self._current_context = self._ns_contexts[-1] |
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110 |
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111 # ContentHandler methods |
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112 |
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113 def setDocumentLocator(self, locator): |
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114 self.locator = locator |
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115 |
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116 def startDocument(self): |
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117 pass |
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118 |
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119 def startPrefixMapping(self, prefix, namespace): |
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120 self._ns_contexts.append(self._current_context.copy()) |
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121 self._current_context[namespace] = prefix |
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122 self.store.bind(prefix, namespace or "", override=False) |
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123 |
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124 def endPrefixMapping(self, prefix): |
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125 self._current_context = self._ns_contexts[-1] |
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126 del self._ns_contexts[-1] |
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127 |
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128 def startElementNS(self, name, qname, attrs): |
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129 stack = self.stack |
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130 stack.append(ElementHandler()) |
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131 current = self.current |
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132 parent = self.parent |
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133 base = attrs.get(BASE, None) |
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134 if base is not None: |
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135 base, frag = urldefrag(base) |
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136 if parent and parent.base: |
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137 base = urljoin(parent.base, base) |
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138 else: |
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139 systemId = self.locator.getPublicId() \ |
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140 or self.locator.getSystemId() |
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141 if systemId: |
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142 base = urljoin(systemId, base) |
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143 else: |
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144 if parent: |
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145 base = parent.base |
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146 if base is None: |
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147 systemId = self.locator.getPublicId() \ |
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148 or self.locator.getSystemId() |
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149 if systemId: |
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150 base, frag = urldefrag(systemId) |
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151 current.base = base |
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152 language = attrs.get(LANG, None) |
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153 if language is None: |
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154 if parent: |
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155 language = parent.language |
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156 current.language = language |
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157 current.start(name, qname, attrs) |
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158 |
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159 def endElementNS(self, name, qname): |
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160 self.current.end(name, qname) |
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161 self.stack.pop() |
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162 |
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163 def characters(self, content): |
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164 char = self.current.char |
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165 if char: |
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166 char(content) |
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167 |
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168 def ignorableWhitespace(self, content): |
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169 pass |
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170 |
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171 def processingInstruction(self, target, data): |
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172 pass |
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173 |
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174 def add_reified(self, sid, xxx_todo_changeme): |
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175 (s, p, o) = xxx_todo_changeme |
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176 self.store.add((sid, RDF.type, RDF.Statement)) |
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177 self.store.add((sid, RDF.subject, s)) |
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178 self.store.add((sid, RDF.predicate, p)) |
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179 self.store.add((sid, RDF.object, o)) |
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180 |
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181 def error(self, message): |
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182 locator = self.locator |
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183 info = "%s:%s:%s: " % (locator.getSystemId(), |
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184 locator.getLineNumber(), |
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185 locator.getColumnNumber()) |
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186 raise ParserError(info + message) |
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187 |
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188 def get_current(self): |
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189 return self.stack[-2] |
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190 # Create a read only property called current so that self.current |
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191 # give the current element handler. |
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192 current = property(get_current) |
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193 |
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194 def get_next(self): |
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195 return self.stack[-1] |
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196 # Create a read only property that gives the element handler to be |
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197 # used for the next element. |
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198 next = property(get_next) |
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199 |
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200 def get_parent(self): |
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201 return self.stack[-3] |
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202 # Create a read only property that gives the current parent |
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203 # element handler |
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204 parent = property(get_parent) |
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205 |
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206 def absolutize(self, uri): |
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207 result = urljoin(self.current.base, uri, allow_fragments=1) |
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208 if uri and uri[-1] == "#" and result[-1] != "#": |
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209 result = "%s#" % result |
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210 return URIRef(result) |
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211 |
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212 def convert(self, name, qname, attrs): |
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213 if name[0] is None: |
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214 name = URIRef(name[1]) |
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215 else: |
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216 name = URIRef("".join(name)) |
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217 atts = {} |
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218 for (n, v) in list(attrs.items()): # attrs._attrs.iteritems(): # |
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219 if n[0] is None: |
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220 att = n[1] |
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221 else: |
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222 att = "".join(n) |
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223 if att.startswith(XMLNS) or att[0:3].lower() == "xml": |
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224 pass |
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225 elif att in UNQUALIFIED: |
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226 # if not RDFNS[att] in atts: |
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227 atts[RDFNS[att]] = v |
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228 else: |
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229 atts[URIRef(att)] = v |
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230 return name, atts |
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231 |
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232 def document_element_start(self, name, qname, attrs): |
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233 if name[0] and URIRef("".join(name)) == RDF.RDF: |
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234 # Cheap hack so 2to3 doesn't turn it into __next__ |
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235 next = getattr(self, 'next') |
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236 next.start = self.node_element_start |
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237 next.end = self.node_element_end |
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238 else: |
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239 self.node_element_start(name, qname, attrs) |
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240 # self.current.end = self.node_element_end |
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241 # TODO... set end to something that sets start such that |
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242 # another element will cause error |
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243 |
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244 def node_element_start(self, name, qname, attrs): |
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245 name, atts = self.convert(name, qname, attrs) |
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246 current = self.current |
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247 absolutize = self.absolutize |
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248 |
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249 # Cheap hack so 2to3 doesn't turn it into __next__ |
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250 next = getattr(self, 'next') |
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251 next.start = self.property_element_start |
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252 next.end = self.property_element_end |
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253 |
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254 if name in NODE_ELEMENT_EXCEPTIONS: |
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255 self.error("Invalid node element URI: %s" % name) |
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256 |
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257 if RDF.ID in atts: |
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258 if RDF.about in atts or RDF.nodeID in atts: |
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259 self.error( |
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260 "Can have at most one of rdf:ID, rdf:about, and rdf:nodeID" |
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261 ) |
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262 |
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263 id = atts[RDF.ID] |
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264 if not is_ncname(id): |
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265 self.error("rdf:ID value is not a valid NCName: %s" % id) |
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266 subject = absolutize("#%s" % id) |
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267 if subject in self.ids: |
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268 self.error( |
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269 "two elements cannot use the same ID: '%s'" % subject) |
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270 self.ids[subject] = 1 # IDs can only appear once within a document |
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271 elif RDF.nodeID in atts: |
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272 if RDF.ID in atts or RDF.about in atts: |
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273 self.error( |
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274 "Can have at most one of rdf:ID, rdf:about, and rdf:nodeID" |
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275 ) |
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276 nodeID = atts[RDF.nodeID] |
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277 if not is_ncname(nodeID): |
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278 self.error( |
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279 "rdf:nodeID value is not a valid NCName: %s" % nodeID) |
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280 if self.preserve_bnode_ids is False: |
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281 if nodeID in self.bnode: |
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282 subject = self.bnode[nodeID] |
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283 else: |
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284 subject = BNode() |
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285 self.bnode[nodeID] = subject |
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286 else: |
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287 subject = BNode(nodeID) |
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288 elif RDF.about in atts: |
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289 if RDF.ID in atts or RDF.nodeID in atts: |
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290 self.error( |
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291 "Can have at most one of rdf:ID, rdf:about, and rdf:nodeID" |
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292 ) |
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293 subject = absolutize(atts[RDF.about]) |
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294 else: |
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295 subject = BNode() |
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296 |
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297 if name != RDF.Description: # S1 |
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298 self.store.add((subject, RDF.type, absolutize(name))) |
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299 |
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300 language = current.language |
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301 for att in atts: |
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302 if not att.startswith(str(RDFNS)): |
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303 predicate = absolutize(att) |
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304 try: |
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305 object = Literal(atts[att], language) |
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306 except Error as e: |
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307 self.error(e.msg) |
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308 elif att == RDF.type: # S2 |
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309 predicate = RDF.type |
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310 object = absolutize(atts[RDF.type]) |
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311 elif att in NODE_ELEMENT_ATTRIBUTES: |
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312 continue |
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313 elif att in PROPERTY_ATTRIBUTE_EXCEPTIONS: # S3 |
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314 self.error("Invalid property attribute URI: %s" % att) |
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315 continue # for when error does not throw an exception |
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316 else: |
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317 predicate = absolutize(att) |
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318 try: |
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319 object = Literal(atts[att], language) |
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320 except Error as e: |
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321 self.error(e.msg) |
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322 self.store.add((subject, predicate, object)) |
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323 |
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324 current.subject = subject |
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325 |
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326 def node_element_end(self, name, qname): |
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327 # repeat node-elements are only allowed |
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328 # at at top-level |
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329 |
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330 if self.parent.object and self.current != self.stack[2]: |
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331 |
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332 self.error("Repeat node-elements inside property elements: %s"%"".join(name)) |
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333 |
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334 self.parent.object = self.current.subject |
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335 |
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336 def property_element_start(self, name, qname, attrs): |
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337 name, atts = self.convert(name, qname, attrs) |
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338 current = self.current |
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339 absolutize = self.absolutize |
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340 |
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341 # Cheap hack so 2to3 doesn't turn it into __next__ |
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342 next = getattr(self, 'next') |
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343 object = None |
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344 current.data = None |
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345 current.list = None |
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346 |
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347 if not name.startswith(str(RDFNS)): |
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348 current.predicate = absolutize(name) |
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349 elif name == RDF.li: |
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350 current.predicate = current.next_li() |
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351 elif name in PROPERTY_ELEMENT_EXCEPTIONS: |
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352 self.error("Invalid property element URI: %s" % name) |
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353 else: |
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354 current.predicate = absolutize(name) |
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355 |
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356 id = atts.get(RDF.ID, None) |
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357 if id is not None: |
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358 if not is_ncname(id): |
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359 self.error("rdf:ID value is not a value NCName: %s" % id) |
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360 current.id = absolutize("#%s" % id) |
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361 else: |
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362 current.id = None |
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363 |
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364 resource = atts.get(RDF.resource, None) |
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365 nodeID = atts.get(RDF.nodeID, None) |
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366 parse_type = atts.get(RDF.parseType, None) |
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367 if resource is not None and nodeID is not None: |
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368 self.error( |
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369 "Property element cannot have both rdf:nodeID and rdf:resource" |
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370 ) |
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371 if resource is not None: |
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372 object = absolutize(resource) |
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373 next.start = self.node_element_start |
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374 next.end = self.node_element_end |
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375 elif nodeID is not None: |
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376 if not is_ncname(nodeID): |
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377 self.error( |
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378 "rdf:nodeID value is not a valid NCName: %s" % nodeID) |
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379 if self.preserve_bnode_ids is False: |
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380 if nodeID in self.bnode: |
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381 object = self.bnode[nodeID] |
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382 else: |
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383 subject = BNode() |
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384 self.bnode[nodeID] = subject |
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385 object = subject |
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386 else: |
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387 object = subject = BNode(nodeID) |
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388 next.start = self.node_element_start |
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389 next.end = self.node_element_end |
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390 else: |
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391 if parse_type is not None: |
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392 for att in atts: |
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393 if att != RDF.parseType and att != RDF.ID: |
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394 self.error("Property attr '%s' now allowed here" % att) |
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395 if parse_type == "Resource": |
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396 current.subject = object = BNode() |
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397 current.char = self.property_element_char |
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398 next.start = self.property_element_start |
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399 next.end = self.property_element_end |
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400 elif parse_type == "Collection": |
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401 current.char = None |
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402 object = current.list = RDF.nil # BNode() |
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403 # self.parent.subject |
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404 next.start = self.node_element_start |
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405 next.end = self.list_node_element_end |
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406 else: # if parse_type=="Literal": |
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407 # All other values are treated as Literal |
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408 # See: http://www.w3.org/TR/rdf-syntax-grammar/ |
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409 # parseTypeOtherPropertyElt |
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410 object = Literal("", datatype=RDF.XMLLiteral) |
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411 current.char = self.literal_element_char |
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412 current.declared = {XMLNS: 'xml'} |
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413 next.start = self.literal_element_start |
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414 next.char = self.literal_element_char |
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415 next.end = self.literal_element_end |
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416 current.object = object |
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417 return |
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418 else: |
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419 object = None |
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420 current.char = self.property_element_char |
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421 next.start = self.node_element_start |
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422 next.end = self.node_element_end |
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423 |
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424 datatype = current.datatype = atts.get(RDF.datatype, None) |
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425 language = current.language |
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426 if datatype is not None: |
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427 # TODO: check that there are no atts other than datatype and id |
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428 datatype = absolutize(datatype) |
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429 else: |
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430 for att in atts: |
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431 if not att.startswith(str(RDFNS)): |
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432 predicate = absolutize(att) |
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433 elif att in PROPERTY_ELEMENT_ATTRIBUTES: |
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434 continue |
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435 elif att in PROPERTY_ATTRIBUTE_EXCEPTIONS: |
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436 self.error("""Invalid property attribute URI: %s""" % att) |
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437 else: |
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438 predicate = absolutize(att) |
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439 |
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440 if att == RDF.type: |
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441 o = URIRef(atts[att]) |
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442 else: |
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443 if datatype is not None: |
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444 language = None |
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445 o = Literal(atts[att], language, datatype) |
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446 |
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447 if object is None: |
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448 object = BNode() |
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449 self.store.add((object, predicate, o)) |
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450 if object is None: |
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451 current.data = "" |
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452 current.object = None |
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453 else: |
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454 current.data = None |
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455 current.object = object |
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456 |
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457 def property_element_char(self, data): |
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458 current = self.current |
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459 if current.data is not None: |
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460 current.data += data |
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461 |
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462 def property_element_end(self, name, qname): |
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463 current = self.current |
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464 if current.data is not None and current.object is None: |
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465 literalLang = current.language |
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466 if current.datatype is not None: |
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467 literalLang = None |
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468 current.object = Literal( |
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469 current.data, literalLang, current.datatype) |
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470 current.data = None |
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471 if self.next.end == self.list_node_element_end: |
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472 if current.object != RDF.nil: |
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473 self.store.add((current.list, RDF.rest, RDF.nil)) |
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474 if current.object is not None: |
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475 self.store.add( |
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476 (self.parent.subject, current.predicate, current.object)) |
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477 if current.id is not None: |
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478 self.add_reified(current.id, (self.parent.subject, |
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479 current.predicate, current.object)) |
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480 current.subject = None |
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481 |
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482 def list_node_element_end(self, name, qname): |
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483 current = self.current |
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484 if self.parent.list == RDF.nil: |
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485 list = BNode() |
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486 # Removed between 20030123 and 20030905 |
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487 # self.store.add((list, RDF.type, LIST)) |
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488 self.parent.list = list |
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489 self.store.add((self.parent.list, RDF.first, current.subject)) |
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490 self.parent.object = list |
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491 self.parent.char = None |
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492 else: |
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493 list = BNode() |
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494 # Removed between 20030123 and 20030905 |
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495 # self.store.add((list, RDF.type, LIST)) |
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496 self.store.add((self.parent.list, RDF.rest, list)) |
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497 self.store.add((list, RDF.first, current.subject)) |
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498 self.parent.list = list |
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499 |
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500 def literal_element_start(self, name, qname, attrs): |
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501 current = self.current |
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502 self.next.start = self.literal_element_start |
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503 self.next.char = self.literal_element_char |
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504 self.next.end = self.literal_element_end |
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505 current.declared = self.parent.declared.copy() |
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506 if name[0]: |
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507 prefix = self._current_context[name[0]] |
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508 if prefix: |
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509 current.object = "<%s:%s" % (prefix, name[1]) |
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510 else: |
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511 current.object = "<%s" % name[1] |
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512 if not name[0] in current.declared: |
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513 current.declared[name[0]] = prefix |
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514 if prefix: |
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515 current.object += (' xmlns:%s="%s"' % (prefix, name[0])) |
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516 else: |
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517 current.object += (' xmlns="%s"' % name[0]) |
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518 else: |
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519 current.object = "<%s" % name[1] |
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520 |
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521 for (name, value) in list(attrs.items()): |
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522 if name[0]: |
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523 if not name[0] in current.declared: |
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524 current.declared[name[0]] = self._current_context[name[0]] |
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525 name = current.declared[name[0]] + ":" + name[1] |
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526 else: |
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527 name = name[1] |
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528 current.object += (' %s=%s' % (name, quoteattr(value))) |
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529 current.object += ">" |
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530 |
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531 def literal_element_char(self, data): |
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532 self.current.object += escape(data) |
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533 |
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534 def literal_element_end(self, name, qname): |
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535 if name[0]: |
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536 prefix = self._current_context[name[0]] |
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537 if prefix: |
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538 end = "</%s:%s>" % (prefix, name[1]) |
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539 else: |
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540 end = "</%s>" % name[1] |
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541 else: |
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542 end = "</%s>" % name[1] |
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543 self.parent.object += self.current.object + end |
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544 |
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545 |
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546 def create_parser(target, store): |
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547 parser = make_parser() |
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548 try: |
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549 # Workaround for bug in expatreader.py. Needed when |
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550 # expatreader is trying to guess a prefix. |
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551 parser.start_namespace_decl( |
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552 "xml", "http://www.w3.org/XML/1998/namespace") |
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553 except AttributeError: |
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554 pass # Not present in Jython (at least) |
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555 parser.setFeature(handler.feature_namespaces, 1) |
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556 rdfxml = RDFXMLHandler(store) |
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557 rdfxml.setDocumentLocator(target) |
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558 # rdfxml.setDocumentLocator(_Locator(self.url, self.parser)) |
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559 parser.setContentHandler(rdfxml) |
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560 parser.setErrorHandler(ErrorHandler()) |
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561 return parser |
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562 |
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563 |
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564 class RDFXMLParser(Parser): |
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565 |
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566 def __init__(self): |
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567 pass |
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568 |
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569 def parse(self, source, sink, **args): |
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570 self._parser = create_parser(source, sink) |
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571 content_handler = self._parser.getContentHandler() |
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572 preserve_bnode_ids = args.get("preserve_bnode_ids", None) |
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573 if preserve_bnode_ids is not None: |
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574 content_handler.preserve_bnode_ids = preserve_bnode_ids |
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575 # # We're only using it once now |
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576 # content_handler.reset() |
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577 # self._parser.reset() |
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578 self._parser.parse(source) |