Mercurial > repos > shellac > guppy_basecaller

annotate env/lib/python3.7/site-packages/schema_salad/java/main_utils/TypeDslLoader.java @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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1 package ${package}.utils;
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2
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3 import java.util.ArrayList;
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4 import java.util.Arrays;
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5 import java.util.HashMap;
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6 import java.util.List;
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7 import java.util.regex.Matcher;
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8 import java.util.regex.Pattern;
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9
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10 public class TypeDslLoader<T> implements Loader<T> {
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11 private final Loader<T> innerLoader;
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12 private final Integer refScope;
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13 private static final Pattern TYPE_DSL_REGEX = Pattern.compile("^([^\\[?]+)(\\[\\])?(\\?)?$");
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14
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15 public TypeDslLoader(final Loader<T> innerLoader, final Integer refScope) {
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16 this.innerLoader = innerLoader;
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17 this.refScope = refScope;
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18 }
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19
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20 private Object resolve(
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21 final String doc_, final String baseUri, final LoadingOptions loadingOptions) {
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22 final Matcher m = TYPE_DSL_REGEX.matcher(doc_);
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23 if (m.matches()) {
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24 final String first =
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25 loadingOptions.expandUrl(m.group(1), baseUri, false, true, this.refScope);
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26 Object second = null;
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27 Object third = null;
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28 if (m.group(2) != null && m.group(2).length() > 0) {
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29 HashMap<String, Object> resolvedMap = new HashMap<String, Object>();
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30 resolvedMap.put("type", "array");
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31 resolvedMap.put("items", first);
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32 second = resolvedMap;
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33 }
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34 if (m.group(3) != null && m.group(3).length() > 0) {
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35 third = Arrays.asList("null", second != null ? second : first);
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36 }
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37 if (third != null) {
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38 return third;
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39 } else {
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40 return second != null ? second : first;
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41 }
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42 } else {
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43 return doc_;
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44 }
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45 }
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46
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47 public T load(
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48 final Object doc_,
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49 final String baseUri,
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50 final LoadingOptions loadingOptions,
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51 final String docRoot) {
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52 Object doc = doc_;
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53 if (doc instanceof List) {
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54 final List<Object> docList = (List<Object>) doc;
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55 final List<Object> r = new ArrayList<Object>();
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56 for (final Object d : docList) {
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57 if (d instanceof String) {
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58 Object resolved = this.resolve((String) d, baseUri, loadingOptions);
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59 if (resolved instanceof List) {
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60 List<Object> resolvedList = (List<Object>) resolved;
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61 for (Object i : resolvedList) {
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62 if (!r.contains(i)) {
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63 r.add(i);
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64 }
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65 }
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66 } else {
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67 if (!r.contains(resolved)) {
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68 r.add(resolved);
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69 }
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70 }
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71 } else {
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72 r.add(d);
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73 }
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74 }
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75 doc = docList;
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76 } else if (doc instanceof String) {
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77 doc = this.resolve((String) doc, baseUri, loadingOptions);
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78 }
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79 return this.innerLoader.load(doc, baseUri, loadingOptions);
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80 }
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81 }