guppy_basecaller: env/lib/python3.7/site-packages/schema_salad/tests/metaschema-pre.yml annotate

author	shellac
date	Sat, 02 May 2020 07:14:21 -0400
parents
children

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0 26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	1 [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	2 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	3 "type": "documentation",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	4 "doc": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	5 "# Semantic Annotations for Linked Avro Data (SALAD)\n\nAuthor:\n\n* Peter Amstutz <pamstutz@veritasgenetics.com>, Veritas Genetics\n\nContributors:\n\n* The developers of Apache Avro\n* The developers of JSON-LD\n* Neboj\u0161a Tijani\u0107 <nebojsa.tijanic@sbgenomics.com>, Seven Bridges Genomics\n\n# Abstract\n\nSalad is a schema language for describing structured linked data documents\nin JSON or YAML documents. A Salad schema provides rules for\npreprocessing, structural validation, and link checking for documents\ndescribed by a Salad schema. Salad builds on JSON-LD and the Apache Avro\ndata serialization system, and extends Avro with features for rich data\nmodeling such as inheritance, template specialization, object identifiers,\nand object references. Salad was developed to provide a bridge between the\nrecord oriented data modeling supported by Apache Avro and the Semantic\nWeb.\n\n# Status of This Document\n\nThis document is the product of the [Common Workflow Language working\ngroup](https://groups.google.com/forum/#!forum/common-workflow-language). The\nlatest version of this document is available in the \"schema_salad\" repository at\n\nhttps://github.com/common-workflow-language/schema_salad\n\nThe products of the CWL working group (including this document) are made available\nunder the terms of the Apache License, version 2.0.\n\n<!--ToC-->\n\n# Introduction\n\nThe JSON data model is an extremely popular way to represent structured\ndata. It is attractive because of its relative simplicity and is a\nnatural fit with the standard types of many programming languages.\nHowever, this simplicity means that basic JSON lacks expressive features\nuseful for working with complex data structures and document formats, such\nas schemas, object references, and namespaces.\n\nJSON-LD is a W3C standard providing a way to describe how to interpret a\nJSON document as Linked Data by means of a \"context\". JSON-LD provides a\npowerful solution for representing object references and namespaces in JSON\nbased on standard web URIs, but is not itself a schema language. Without a\nschema providing a well defined structure, it is difficult to process an\narbitrary JSON-LD document as idiomatic JSON because there are many ways to\nexpress the same data that are logically equivalent but structurally\ndistinct.\n\nSeveral schema languages exist for describing and validating JSON data,\nsuch as the Apache Avro data serialization system, however none understand\nlinked data. As a result, to fully take advantage of JSON-LD to build the\nnext generation of linked data applications, one must maintain separate\nJSON schema, JSON-LD context, RDF schema, and human documentation, despite\nsignificant overlap of content and obvious need for these documents to stay\nsynchronized.\n\nSchema Salad is designed to address this gap. It provides a schema\nlanguage and processing rules for describing structured JSON content\npermitting URI resolution and strict document validation. The schema\nlanguage supports linked data through annotations that describe the linked\ndata interpretation of the content, enables generation of JSON-LD context\nand RDF schema, and production of RDF triples by applying the JSON-LD\ncontext. The schema language also provides for robust support of inline\ndocumentation.\n\n## Introduction to v1.1\n\nThis is the third version of of the Schema Salad specification. It is\ndeveloped concurrently with v1.1 of the Common Workflow Language for use in\nspecifying the Common Workflow Language, however Schema Salad is intended to be\nuseful to a broader audience. Compared to the v1.0 schema salad\nspecification, the following changes have been made:\n\n* Support for `default` values on record fields to specify default values\n* Add subscoped fields (fields which introduce a new inner scope for identifiers)\n* Add the inVocab flag (default true) to indicate if a type is added to the vocabulary of well known terms or must be prefixed\n* Add secondaryFilesDSL micro DSL (domain specific language) to convert text strings to a secondaryFiles record type used in CWL\n* The `$mixin` feature has been removed from the specification, as it\n is poorly documented, not included in conformance testing,\n and not widely supported.\n\n## References to Other Specifications\n\nJavascript Object Notation (JSON): http://json.org\n\nJSON Linked Data (JSON-LD): http://json-ld.org\n\nYAML: https://yaml.org/spec/1.2/spec.html\n\nAvro: https://avro.apache.org/docs/current/spec.html\n\nUniform Resource Identifier (URI) Generic Syntax: https://tools.ietf.org/html/rfc3986)\n\nResource Description Framework (RDF): http://www.w3.org/RDF/\n\nUTF-8: https://www.ietf.org/rfc/rfc2279.txt)\n\n## Scope\n\nThis document describes the syntax, data model, algorithms, and schema\nlanguage for working with Salad documents. It is not intended to document\na specific implementation of Salad, however it may serve as a reference for\nthe behavior of conforming implementations.\n\n## Terminology\n\nThe terminology used to describe Salad documents is defined in the Concepts\nsection of the specification. The terms defined in the following list are\nused in building those definitions and in describing the actions of an\nSalad implementation:\n\nmay: Conforming Salad documents and Salad implementations are permitted but\nnot required to be interpreted as described.\n\nmust: Conforming Salad documents and Salad implementations are required\nto be interpreted as described; otherwise they are in error.\n\nerror: A violation of the rules of this specification; results are\nundefined. Conforming implementations may detect and report an error and may\nrecover from it.\n\nfatal error: A violation of the rules of this specification; results\nare undefined. Conforming implementations must not continue to process the\ndocument and may report an error.\n\nat user option: Conforming software may or must (depending on the modal verb in\nthe sentence) behave as described; if it does, it must provide users a means to\nenable or disable the behavior described.\n\n# Document model\n\n## Data concepts\n\nAn object is a data structure equivalent to the \"object\" type in JSON,\nconsisting of a unordered set of name/value pairs (referred to here as\nfields) and where the name is a string and the value is a string, number,\nboolean, array, or object.\n\nA document is a file containing a serialized object, or an array of\nobjects.\n\nA document type is a class of files that share a common structure and\nsemantics.\n\nA document schema is a formal description of the grammar of a document type.\n\nA base URI is a context-dependent URI used to resolve relative references.\n\nAn identifier is a URI that designates a single document or single\nobject within a document.\n\nA vocabulary is the set of symbolic field names and enumerated symbols defined\nby a document schema, where each term maps to absolute URI.\n\n## Syntax\n\nConforming Salad v1.1 documents are serialized and loaded using a\nsubset of YAML 1.2 syntax and UTF-8 text encoding. Salad documents\nare written using the [JSON-compatible subset of YAML described in\nsection 10.2](https://yaml.org/spec/1.2/spec.html#id2803231). The\nfollowing features of YAML must not be used in conforming Salad\ndocuments:\n\n* Use of explicit node tags with leading `!` or `!!`\n* Use of anchors with leading `&` and aliases with leading ``\n %YAML directives\n* %TAG directives\n\nIt is a fatal error if the document is not valid YAML.\n\nA Salad document must consist only of either a single root object or an\narray of objects.\n\n## Document context\n\n### Implied context\n\nThe implicit context consists of the vocabulary defined by the schema and\nthe base URI. By default, the base URI must be the URI that was used to\nload the document. It may be overridden by an explicit context.\n\n### Explicit context\n\nIf a document consists of a root object, this object may contain the\nfields `$base`, `$namespaces`, `$schemas`, and `$graph`:\n\n * `$base`: Must be a string. Set the base URI for the document used to\n resolve relative references.\n\n * `$namespaces`: Must be an object with strings as values. The keys of\n the object are namespace prefixes used in the document; the values of\n the object are the prefix expansions.\n\n * `$schemas`: Must be an array of strings. This field may list URI\n references to documents in RDF-XML format which will be queried for RDF\n schema data. The subjects and predicates described by the RDF schema\n may provide additional semantic context for the document, and may be\n used for validation of prefixed extension fields found in the document.\n\nOther directives beginning with `$` must be ignored.\n\n## Document graph\n\nIf a document consists of a single root object, this object may contain the\nfield `$graph`. This field must be an array of objects. If present, this\nfield holds the primary content of the document. A document that consists\nof array of objects at the root is an implicit graph.\n\n## Document metadata\n\nIf a document consists of a single root object, metadata about the\ndocument, such as authorship, may be declared in the root object.\n\n## Document schema\n\nDocument preprocessing, link validation and schema validation require a\ndocument schema. A schema may consist of:\n\n * At least one record definition object which defines valid fields that\n make up a record type. Record field definitions include the valid types\n that may be assigned to each field and annotations to indicate fields\n that represent identifiers and links, described below in \"Semantic\n Annotations\".\n\n * Any number of enumerated type objects which define a set of finite set of symbols that are\n valid value of the type.\n\n * Any number of documentation objects which allow in-line documentation of the schema.\n\nThe schema for defining a salad schema (the metaschema) is described in\ndetail in the [Schema](#Schema) section.\n\n## Record field annotations\n\nIn a document schema, record field definitions may include the field\n`jsonldPredicate`, which may be either a string or object. Implementations\nmust use the following document preprocessing of fields by the following\nrules:\n\n * If the value of `jsonldPredicate` is `@id`, the field is an identifier\n field.\n\n * If the value of `jsonldPredicate` is an object, and contains that\n object contains the field `_type` with the value `@id`, the field is a\n link field subject to [link validation](#Link_validation).\n\n * If the value of `jsonldPredicate` is an object which contains the\n field `_type` with the value `@vocab`, the field value is subject to\n [vocabulary resolution](#Vocabulary_resolution).\n\n## Document traversal\n\nTo perform document document preprocessing, link validation and schema\nvalidation, the document must be traversed starting from the fields or\narray items of the root object or array and recursively visiting each child\nitem which contains an object or arrays.\n\n## Short names\n\nThe \"short name\" of an fully qualified identifier is the portion of\nthe identifier following the final slash `/` of either the fragment\nidentifier following `#` or the path portion, if there is no fragment.\nSome examples:\n\n* the short name of `http://example.com/foo` is `foo`\n* the short name of `http://example.com/#bar` is `bar`\n* the short name of `http://example.com/foo/bar` is `bar`\n* the short name of `http://example.com/foo#bar` is `bar`\n* the short name of `http://example.com/#foo/bar` is `bar`\n* the short name of `http://example.com/foo#bar/baz` is `baz`\n\n## Inheritance and specialization\n\nA record definition may inherit from one or more record definitions\nwith the `extends` field. This copies the fields defined in the\nparent record(s) as the base for the new record. A record definition\nmay `specialize` type declarations of the fields inherited from the\nbase record. For each field inherited from the base record, any\ninstance of the type in `specializeFrom` is replaced with the type in\n`specializeTo`. The type in `specializeTo` should extend from the\ntype in `specializeFrom`.\n\nA record definition may be `abstract`. This means the record\ndefinition is not used for validation on its own, but may be extended\nby other definitions. If an abstract type appears in a field\ndefinition, it is logically replaced with a union of all concrete\nsubtypes of the abstract type. In other words, the field value does\nnot validate as the abstract type, but must validate as some concrete\ntype that inherits from the abstract type.\n\n# Document preprocessing\n\nAfter processing the explicit context (if any), document preprocessing\nbegins. Starting from the document root, object fields values or array\nitems which contain objects or arrays are recursively traversed\ndepth-first. For each visited object, field names, identifier fields, link\nfields, vocabulary fields, and `$import` and `$include` directives must be\nprocessed as described in this section. The order of traversal of child\nnodes within a parent node is undefined.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	6 "## Field name resolution\n\nThe document schema declares the vocabulary of known field names. During\npreprocessing traversal, field name in the document which are not part of\nthe schema vocabulary must be resolved to absolute URIs. Under \"strict\"\nvalidation, it is an error for a document to include fields which are not\npart of the vocabulary and not resolvable to absolute URIs. Fields names\nwhich are not part of the vocabulary are resolved using the following\nrules:\n\n* If an field name URI begins with a namespace prefix declared in the\ndocument context (`@context`) followed by a colon `:`, the prefix and\ncolon must be replaced by the namespace declared in `@context`.\n\n* If there is a vocabulary term which maps to the URI of a resolved\nfield, the field name must be replace with the vocabulary term.\n\n* If a field name URI is an absolute URI consisting of a scheme and path\nand is not part of the vocabulary, no processing occurs.\n\nField name resolution is not relative. It must not be affected by the\nbase URI.\n\n### Field name resolution example\n\nGiven the following schema:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	7 "{\n \"$namespaces\": {\n \"acid\": \"http://example.com/acid#\"\n },\n \"$graph\": [{\n \"name\": \"ExampleType\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"base\",\n \"type\": \"string\",\n \"jsonldPredicate\": \"http://example.com/base\"\n }]\n }]\n}\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	8 "```\n\nProcess the following example:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	9 " {\n \"base\": \"one\",\n \"form\": {\n \"http://example.com/base\": \"two\",\n \"http://example.com/three\": \"three\",\n },\n \"acid:four\": \"four\"\n }\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	10 "```\n\nThis becomes:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	11 " {\n \"base\": \"one\",\n \"form\": {\n \"base\": \"two\",\n \"http://example.com/three\": \"three\",\n },\n \"http://example.com/acid#four\": \"four\"\n }\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	12 "```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	13 "## Identifier resolution\n\nThe schema may designate one or more fields as identifier fields to identify\nspecific objects. Processing must resolve relative identifiers to absolute\nidentifiers using the following rules:\n\n * If an identifier URI begins with `#` it is a current document\n fragment identifier. It is resolved relative to the base URI by\n setting or replacing the fragment portion of the base URI.\n\n * If an identifier URI contains `#` in some other position is a\n relative URI with fragment identifier. It is resolved relative\n to the base URI by stripping the last path segment from the base\n URI and adding the identifier followed by the fragment.\n\n * If an identifier URI does not contain a scheme and does not\n contain `#` it is a parent relative fragment identifier.\n\n * If an identifier URI is a parent relative fragment identifier\n and the base URI does not contain a document fragment, set the\n document fragment on the base URI.\n\n * If an identifier URI is a parent relative fragment identifier\n and the object containing this identifier is assigned to a\n parent object field defined with `subscope` in\n `jsonldPredicate`, append a slash `/` to the base URI fragment\n followed by the value of the parent field `subscope`. Then\n append the identifier as described in the next rule.\n\n * If an identifier URI is a parent relative fragment identifier\n and the base URI contains a document fragment, append a slash\n `/` to the fragment followed by the identifier field to the\n fragment portion of the base URI.\n\n * If an identifier URI begins with a namespace prefix declared in\n `$namespaces` followed by a colon `:`, the prefix and colon must be\n replaced by the namespace declared in `$namespaces`.\n\n * If an identifier URI is an absolute URI consisting of a scheme and path,\n no processing occurs.\n\nWhen preprocessing visits a node containing an identifier, that identifier\nmust be used as the base URI to process child nodes.\n\nIt is an error for more than one object in a document to have the same\nabsolute URI.\n\n### Identifier resolution example\n\nGiven the following schema:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	14 "{\n \"$namespaces\": {\n \"acid\": \"http://example.com/acid#\"\n },\n \"$graph\": [{\n \"name\": \"ExampleType\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"id\",\n \"type\": \"string\",\n \"jsonldPredicate\": \"@id\"\n }]}, {\n \"name\": \"SubscopeType\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"subscopeField\",\n \"type\": \"ExampleType\",\n \"jsonldPredicate\": {\n \"subscope\": \"thisIsASubscope\"\n }\n }]\n }]\n}\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	15 "```\n\nProcess the following example:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	16 " {\n \"id\": \"http://example.com/base\",\n \"form\": {\n \"id\": \"one\",\n \"things\": [\n {\n \"id\": \"two\"\n },\n {\n \"id\": \"#three\",\n },\n {\n \"id\": \"four#five\",\n },\n {\n \"id\": \"acid:six\",\n },\n {\n \"subscopeField\": {\n \"id\": \"seven\"\n }\n }\n ],\n }\n }\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	17 "```\n\nThis becomes:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	18 "{\n \"id\": \"http://example.com/base\",\n \"form\": {\n \"id\": \"http://example.com/base#one\",\n \"things\": [\n {\n \"id\": \"http://example.com/base#one/two\"\n },\n {\n \"id\": \"http://example.com/base#three\"\n },\n {\n \"id\": \"http://example.com/four#five\",\n },\n {\n \"id\": \"http://example.com/acid#six\",\n },\n {\n \"subscopeField\": {\n \"id\": \"http://example.com/base#one/thisIsASubscope/seven\"\n }\n }\n ],\n }\n}\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	19 "```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	20 "## Link resolution\n\nThe schema may designate one or more fields as link fields reference other\nobjects. Processing must resolve links to either absolute URIs using the\nfollowing rules:\n\n* If a reference URI is prefixed with `#` it is a relative\nfragment identifier. It is resolved relative to the base URI by setting\nor replacing the fragment portion of the base URI.\n\n* If a reference URI does not contain a scheme and is not prefixed with `#`\nit is a path relative reference. If the reference URI contains `#` in any\nposition other than the first character, the reference URI must be divided\ninto a path portion and a fragment portion split on the first instance of\n`#`. The path portion is resolved relative to the base URI by the following\nrule: if the path portion of the base URI ends in a slash `/`, append the\npath portion of the reference URI to the path portion of the base URI. If\nthe path portion of the base URI does not end in a slash, replace the final\npath segment with the path portion of the reference URI. Replace the\nfragment portion of the base URI with the fragment portion of the reference\nURI.\n\n* If a reference URI begins with a namespace prefix declared in `$namespaces`\nfollowed by a colon `:`, the prefix and colon must be replaced by the\nnamespace declared in `$namespaces`.\n\n* If a reference URI is an absolute URI consisting of a scheme and path,\nno processing occurs.\n\nLink resolution must not affect the base URI used to resolve identifiers\nand other links.\n\n### Link resolution example\n\nGiven the following schema:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	21 "{\n \"$namespaces\": {\n \"acid\": \"http://example.com/acid#\"\n },\n \"$graph\": [{\n \"name\": \"ExampleType\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"link\",\n \"type\": \"string\",\n \"jsonldPredicate\": {\n \"_type\": \"@id\"\n }\n }]\n }]\n}\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	22 "```\n\nProcess the following example:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	23 "{\n \"$base\": \"http://example.com/base\",\n \"link\": \"http://example.com/base/zero\",\n \"form\": {\n \"link\": \"one\",\n \"things\": [\n {\n \"link\": \"two\"\n },\n {\n \"link\": \"#three\",\n },\n {\n \"link\": \"four#five\",\n },\n {\n \"link\": \"acid:six\",\n }\n ]\n }\n}\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	24 "```\n\nThis becomes:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	25 "{\n \"$base\": \"http://example.com/base\",\n \"link\": \"http://example.com/base/zero\",\n \"form\": {\n \"link\": \"http://example.com/one\",\n \"things\": [\n {\n \"link\": \"http://example.com/two\"\n },\n {\n \"link\": \"http://example.com/base#three\"\n },\n {\n \"link\": \"http://example.com/four#five\",\n },\n {\n \"link\": \"http://example.com/acid#six\",\n }\n ]\n }\n}\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	26 "```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	27 "## Vocabulary resolution\n\n The schema may designate one or more vocabulary fields which use\n terms defined in the vocabulary. The vocabulary are the short\n names of all the identifiers in the schema. Processing must\n resolve vocabulary fields to either vocabulary terms or absolute\n URIs by first applying the link resolution rules defined above,\n then applying the following additional rule:\n\n * If a reference URI is a vocabulary field, and there is a vocabulary\n term which maps to the resolved URI, the reference must be replace with\n the vocabulary term.\n\n### Vocabulary resolution example\n\nGiven the following schema:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	28 "{\n \"$namespaces\": {\n \"acid\": \"http://example.com/acid#\"\n },\n \"$graph\": [{\n \"name\": \"Colors\",\n \"type\": \"enum\",\n \"symbols\": [\"acid:red\"]\n },\n {\n \"name\": \"ExampleType\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"voc\",\n \"type\": \"string\",\n \"jsonldPredicate\": {\n \"_type\": \"@vocab\"\n }\n }]\n }]\n}\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	29 "```\n\nProcess the following example:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	30 " {\n \"form\": {\n \"things\": [\n {\n \"voc\": \"red\",\n },\n {\n \"voc\": \"http://example.com/acid#red\",\n },\n {\n \"voc\": \"http://example.com/acid#blue\",\n }\n ]\n }\n }\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	31 "```\n\nThis becomes:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	32 " {\n \"form\": {\n \"things\": [\n {\n \"voc\": \"red\",\n },\n {\n \"voc\": \"red\",\n },\n {\n \"voc\": \"http://example.com/acid#blue\",\n }\n ]\n }\n }\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	33 "```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	34 "## Import\n\nDuring preprocessing traversal, an implementation must resolve `$import`\ndirectives. An `$import` directive is an object consisting of exactly one\nfield `$import` specifying resource by URI string. It is an error if there\nare additional fields in the `$import` object, such additional fields must\nbe ignored.\n\nThe URI string must be resolved to an absolute URI using the link\nresolution rules described previously. Implementations must support\nloading from `file`, `http` and `https` resources. The URI referenced by\n`$import` must be loaded and recursively preprocessed as a Salad document.\nThe external imported document does not inherit the context of the\nimporting document, and the default base URI for processing the imported\ndocument must be the URI used to retrieve the imported document. If the\n`$import` URI includes a document fragment, the fragment must be excluded\nfrom the base URI used to preprocess the imported document.\n\nOnce loaded and processed, the `$import` node is replaced in the document\nstructure by the object or array yielded from the import operation.\n\nURIs may reference document fragments which refer to specific an object in\nthe target document. This indicates that the `$import` node must be\nreplaced by only the object with the appropriate fragment identifier.\n\nIt is a fatal error if an import directive refers to an external resource\nor resource fragment which does not exist or is not accessible.\n\n### Import example\n\nimport.yml:\n```\n{\n \"hello\": \"world\"\n}\n\n```\n\nparent.yml:\n```\n{\n \"form\": {\n \"bar\": {\n \"$import\": \"import.yml\"\n }\n }\n}\n\n```\n\nThis becomes:\n\n```\n{\n \"form\": {\n \"bar\": {\n \"hello\": \"world\"\n }\n }\n}\n```\n\n## Include\n\nDuring preprocessing traversal, an implementation must resolve `$include`\ndirectives. An `$include` directive is an object consisting of exactly one\nfield `$include` specifying a URI string. It is an error if there are\nadditional fields in the `$include` object, such additional fields must be\nignored.\n\nThe URI string must be resolved to an absolute URI using the link\nresolution rules described previously. The URI referenced by `$include` must\nbe loaded as a text data. Implementations must support loading from\n`file`, `http` and `https` resources. Implementations may transcode the\ncharacter encoding of the text data to match that of the parent document,\nbut must not interpret or parse the text document in any other way.\n\nOnce loaded, the `$include` node is replaced in the document structure by a\nstring containing the text data loaded from the resource.\n\nIt is a fatal error if an import directive refers to an external resource\nwhich does not exist or is not accessible.\n\n### Include example\n\nparent.yml:\n```\n{\n \"form\": {\n \"bar\": {\n \"$include\": \"include.txt\"\n }\n }\n}\n\n```\n\ninclude.txt:\n```\nhello world\n\n```\n\nThis becomes:\n\n```\n{\n \"form\": {\n \"bar\": \"hello world\"\n }\n}\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	35 "## Identifier maps\n\nThe schema may designate certain fields as having a `mapSubject`. If the\nvalue of the field is a JSON object, it must be transformed into an array of\nJSON objects. Each key-value pair from the source JSON object is a list\nitem, each list item must be a JSON objects, and the value of the key is\nassigned to the field specified by `mapSubject`.\n\nFields which have `mapSubject` specified may also supply a `mapPredicate`.\nIf the value of a map item is not a JSON object, the item is transformed to a\nJSON object with the key assigned to the field specified by `mapSubject` and\nthe value assigned to the field specified by `mapPredicate`.\n\n### Identifier map example\n\nGiven the following schema:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	36 "{\n \"$graph\": [{\n \"name\": \"MappedType\",\n \"type\": \"record\",\n \"documentRoot\": true,\n \"fields\": [{\n \"name\": \"mapped\",\n \"type\": {\n \"type\": \"array\",\n \"items\": \"ExampleRecord\"\n },\n \"jsonldPredicate\": {\n \"mapSubject\": \"key\",\n \"mapPredicate\": \"value\"\n }\n }],\n },\n {\n \"name\": \"ExampleRecord\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"key\",\n \"type\": \"string\"\n }, {\n \"name\": \"value\",\n \"type\": \"string\"\n }\n ]\n }]\n}\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	37 "```\n\nProcess the following example:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	38 "{\n \"mapped\": {\n \"shaggy\": {\n \"value\": \"scooby\"\n },\n \"fred\": \"daphne\"\n }\n}",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	39 "```\n\nThis becomes:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	40 "{\n \"mapped\": [\n {\n \"value\": \"daphne\",\n \"key\": \"fred\"\n },\n {\n \"value\": \"scooby\",\n \"key\": \"shaggy\"\n }\n ]\n}",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	41 "```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	42 "## Domain Specific Language for types\n\nFields may be tagged `typeDSL: true` in `jsonldPredicate`. If so, the field is expanded using the\nfollowing micro-DSL for schema salad types:\n\n* If the type ends with a question mark `?`, the question mark is stripped off and the type is expanded to a union with `null`\n* If the type ends with square brackets `[]` it is expanded to an array with items of the preceeding type symbol\n* The type may end with both `[]?` to indicate it is an optional array.\n* Identifier resolution is applied after type DSL expansion.\n\n### Type DSL example\n\nGiven the following schema:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	43 "{\n \"$graph\": [\n {\"$import\": \"metaschema_base.yml\"},\n {\n \"name\": \"TypeDSLExample\",\n \"type\": \"record\",\n \"documentRoot\": true,\n \"fields\": [{\n \"name\": \"extype\",\n \"type\": \"string\",\n \"jsonldPredicate\": {\n _type: \"@vocab\",\n \"typeDSL\": true\n }\n }]\n }]\n}\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	44 "```\n\nProcess the following example:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	45 "[{\n \"extype\": \"string\"\n}, {\n \"extype\": \"string?\"\n}, {\n \"extype\": \"string[]\"\n}, {\n \"extype\": \"string[]?\"\n}]\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	46 "```\n\nThis becomes:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	47 "[\n {\n \"extype\": \"string\"\n }, \n {\n \"extype\": [\n \"null\", \n \"string\"\n ]\n }, \n {\n \"extype\": {\n \"type\": \"array\", \n \"items\": \"string\"\n }\n }, \n {\n \"extype\": [\n \"null\", \n {\n \"type\": \"array\", \n \"items\": \"string\"\n }\n ]\n }\n]\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	48 "```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	49 "## Domain Specific Language for secondary files\n\nFields may be tagged `secondaryFilesDSL: true` in `jsonldPredicate`. If so, the field is expanded using the\nfollowing micro-DSL for secondary files:\n\n* If the value is a string, it is transformed to an object with two fields `pattern` and `required`\n* By default, the value of `required` is `null` (this indicates default behavior, which may be based on the context)\n* If the value ends with a question mark `?` the question mark is\n stripped off and the value of the field `required` is set to `False`\n* The remaining value is assigned to the field `pattern`\n\n### Type DSL example\n\nGiven the following schema:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	50 "{\n \"$graph\": [\n {\n \"name\": \"SecondaryFilesDSLExample\",\n \"type\": \"record\",\n \"documentRoot\": true,\n \"fields\": [{\n \"name\": \"secondaryFiles\",\n \"type\": \"string\",\n \"jsonldPredicate\": {\n _type: \"@vocab\",\n \"secondaryFilesDSL\": true\n }\n }]\n }]\n}\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	51 "```\n\nProcess the following example:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	52 "[{\n \"secondaryFiles\": \".bai\"\n}, {\n \"secondaryFiles\": \".bai?\"\n}, {\n \"secondaryFiles\": {\n \"pattern\": \".bai?\"\n}, {\n \"secondaryFiles\": {\n \"pattern\": \".bai?\",\n \"required\": true\n}]\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	53 "```\n\nThis becomes:\n\n```\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	54 "[\n {\n \"secondaryFiles\": {\n \"pattern\": \".bai\",\n \"required\": null\n },\n {\n \"secondaryFiles\": {\n \"pattern\": \".bai\",\n \"required\": false\n },\n {\n \"secondaryFiles\": {\n \"pattern\": \".bai?\"\n },\n {\n \"secondaryFiles\": {\n \"pattern\": \".bai?\",\n \"required\": true\n },\n]\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	55 "```\n"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	56 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	57 "name": "https://w3id.org/cwl/salad#Semantic_Annotations_for_Linked_Avro_Data"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	58 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	59 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	60 "type": "documentation",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	61 "doc": "# Link validation\n\nOnce a document has been preprocessed, an implementation may validate\nlinks. The link validation traversal may visit fields which the schema\ndesignates as link fields and check that each URI references an existing\nobject in the current document, an imported document, file system, or\nnetwork resource. Failure to validate links may be a fatal error. Link\nvalidation behavior for individual fields may be modified by `identity` and\n`noLinkCheck` in the `jsonldPredicate` section of the field schema.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	62 "name": "https://w3id.org/cwl/salad#Link_Validation"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	63 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	64 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	65 "type": "documentation",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	66 "doc": "# Validating a document against a schema\n\nTo validate a document against the schema, first [apply\npreprocessing](#Document_preprocessing), then, use the following\nalgorithm.\n\n1. The document root must be an object or a list. If the document root is an\n object containing the field `$graph` (which must be a list of\n objects), then validation applies to each object in the list.\n2. For each object, attempt to validate as one of the record types\n flagged with `documentRoot: true`.\n3. To validate a record, go through `fields` and recursively\n validate each field of the object.\n4. For fields with a list of types (type union), go through each\n type in the list and recursively validate the type. For the\n field to be valid, at least one type in the union must be valid.\n5. Missing fields are considered `null`. To validate, the allowed types\n for the field must include `null`\n6. Primitive types are null, boolean, int, long, float, double,\n string. To validate, the value in the document must have one\n of these type. For numerics, the value appearing in the\n document must fit into the specified type.\n7. To validate an array, the value in the document must be a list,\n and each item in the list must recursively validate as a type\n in `items`.\n8. To validate an enum, the value in the document be a string, and\n the value must be equal to the short name of one of the values\n listed in `symbols`.\n9. As a special case, a field with the `Expression` type validates string values\n which contain a CWL parameter reference or expression in the form\n `$(...)` or `${...}`\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	67 "name": "https://w3id.org/cwl/salad#Schema_Validation"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	68 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	69 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	70 "type": "documentation",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	71 "doc": "# Schema\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	72 "name": "https://w3id.org/cwl/salad#Schema"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	73 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	74 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	75 "type": "record",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	76 "abstract": true,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	77 "name": "https://w3id.org/cwl/salad#Documented",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	78 "fields": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	79 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	80 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	81 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	82 "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	83 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	84 "items": "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	85 "type": "array"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	86 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	87 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	88 "doc": "A documentation string for this object, or an array of strings which should be concatenated.",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	89 "name": "https://w3id.org/cwl/salad#Documented/doc",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	90 "jsonldPredicate": "rdfs:comment"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	91 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	92 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	93 "docParent": "https://w3id.org/cwl/salad#Schema"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	94 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	95 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	96 "type": "enum",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	97 "doc": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	98 "Salad data types are based on Avro schema declarations. Refer to the\n[Avro schema declaration documentation](https://avro.apache.org/docs/current/spec.html#schemas) for\ndetailed information.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	99 "null: no value",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	100 "boolean: a binary value",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	101 "int: 32-bit signed integer",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	102 "long: 64-bit signed integer",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	103 "float: single precision (32-bit) IEEE 754 floating-point number",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	104 "double: double precision (64-bit) IEEE 754 floating-point number",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	105 "string: Unicode character sequence"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	106 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	107 "name": "https://w3id.org/cwl/salad#PrimitiveType",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	108 "symbols": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	109 "https://w3id.org/cwl/salad#null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	110 "http://www.w3.org/2001/XMLSchema#boolean",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	111 "http://www.w3.org/2001/XMLSchema#int",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	112 "http://www.w3.org/2001/XMLSchema#long",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	113 "http://www.w3.org/2001/XMLSchema#float",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	114 "http://www.w3.org/2001/XMLSchema#double",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	115 "http://www.w3.org/2001/XMLSchema#string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	116 ]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	117 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	118 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	119 "type": "enum",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	120 "docAfter": "https://w3id.org/cwl/salad#PrimitiveType",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	121 "doc": "The Any type validates for any non-null value.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	122 "name": "https://w3id.org/cwl/salad#Any",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	123 "symbols": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	124 "https://w3id.org/cwl/salad#Any"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	125 ]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	126 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	127 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	128 "type": "record",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	129 "fields": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	130 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	131 "type": "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	132 "doc": "The name of the field\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	133 "name": "https://w3id.org/cwl/salad#RecordField/name",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	134 "jsonldPredicate": "@id"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	135 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	136 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	137 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	138 "PrimitiveType",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	139 "RecordSchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	140 "EnumSchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	141 "ArraySchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	142 "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	143 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	144 "items": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	145 "PrimitiveType",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	146 "RecordSchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	147 "EnumSchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	148 "ArraySchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	149 "string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	150 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	151 "type": "array"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	152 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	153 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	154 "doc": "The field type\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	155 "name": "https://w3id.org/cwl/salad#RecordField/type",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	156 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	157 "_id": "https://w3id.org/cwl/salad#type",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	158 "_type": "@vocab",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	159 "typeDSL": true,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	160 "refScope": 2
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	161 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	162 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	163 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	164 "doc": "A field of a record.",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	165 "name": "https://w3id.org/cwl/salad#RecordField",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	166 "extends": "https://w3id.org/cwl/salad#Documented"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	167 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	168 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	169 "type": "record",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	170 "fields": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	171 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	172 "name": "https://w3id.org/cwl/salad#RecordSchema/fields",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	173 "doc": "Defines the fields of the record.",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	174 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	175 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	176 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	177 "items": "RecordField",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	178 "type": "array"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	179 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	180 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	181 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	182 "_id": "https://w3id.org/cwl/salad#fields",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	183 "mapSubject": "name",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	184 "mapPredicate": "type"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	185 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	186 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	187 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	188 "name": "https://w3id.org/cwl/salad#RecordSchema/type",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	189 "doc": "Must be `record`",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	190 "type": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	191 "type": "enum",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	192 "symbols": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	193 "https://w3id.org/cwl/salad#record"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	194 ]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	195 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	196 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	197 "_id": "https://w3id.org/cwl/salad#type",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	198 "_type": "@vocab",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	199 "typeDSL": true,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	200 "refScope": 2
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	201 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	202 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	203 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	204 "name": "https://w3id.org/cwl/salad#RecordSchema"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	205 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	206 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	207 "type": "record",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	208 "fields": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	209 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	210 "name": "https://w3id.org/cwl/salad#EnumSchema/symbols",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	211 "doc": "Defines the set of valid symbols.",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	212 "type": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	213 "items": "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	214 "type": "array"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	215 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	216 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	217 "_id": "https://w3id.org/cwl/salad#symbols",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	218 "_type": "@id",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	219 "identity": true
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	220 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	221 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	222 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	223 "name": "https://w3id.org/cwl/salad#EnumSchema/type",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	224 "doc": "Must be `enum`",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	225 "type": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	226 "type": "enum",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	227 "symbols": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	228 "https://w3id.org/cwl/salad#enum"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	229 ]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	230 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	231 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	232 "_id": "https://w3id.org/cwl/salad#type",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	233 "_type": "@vocab",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	234 "typeDSL": true,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	235 "refScope": 2
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	236 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	237 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	238 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	239 "doc": "Define an enumerated type.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	240 "name": "https://w3id.org/cwl/salad#EnumSchema"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	241 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	242 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	243 "type": "record",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	244 "fields": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	245 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	246 "name": "https://w3id.org/cwl/salad#ArraySchema/items",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	247 "doc": "Defines the type of the array elements.",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	248 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	249 "PrimitiveType",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	250 "RecordSchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	251 "EnumSchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	252 "ArraySchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	253 "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	254 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	255 "items": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	256 "PrimitiveType",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	257 "RecordSchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	258 "EnumSchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	259 "ArraySchema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	260 "string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	261 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	262 "type": "array"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	263 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	264 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	265 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	266 "_id": "https://w3id.org/cwl/salad#items",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	267 "_type": "@vocab",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	268 "refScope": 2
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	269 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	270 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	271 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	272 "name": "https://w3id.org/cwl/salad#ArraySchema/type",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	273 "doc": "Must be `array`",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	274 "type": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	275 "type": "enum",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	276 "symbols": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	277 "https://w3id.org/cwl/salad#array"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	278 ]
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	279 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	280 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	281 "_id": "https://w3id.org/cwl/salad#type",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	282 "_type": "@vocab",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	283 "typeDSL": true,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	284 "refScope": 2
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	285 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	286 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	287 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	288 "name": "https://w3id.org/cwl/salad#ArraySchema"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	289 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	290 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	291 "type": "record",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	292 "fields": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	293 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	294 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	295 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	296 "string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	297 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	298 "doc": "The predicate URI that this field corresponds to.\nCorresponds to JSON-LD `@id` directive.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	299 "name": "https://w3id.org/cwl/salad#JsonldPredicate/_id",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	300 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	301 "_id": "https://w3id.org/cwl/salad#_id",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	302 "_type": "@id",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	303 "identity": true
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	304 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	305 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	306 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	307 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	308 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	309 "string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	310 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	311 "doc": "The context type hint, corresponds to JSON-LD `@type` directive.\n\n* If the value of this field is `@id` and `identity` is false or\nunspecified, the parent field must be resolved using the link\nresolution rules. If `identity` is true, the parent field must be\nresolved using the identifier expansion rules.\n\n* If the value of this field is `@vocab`, the parent field must be\n resolved using the vocabulary resolution rules.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	312 "name": "https://w3id.org/cwl/salad#JsonldPredicate/_type"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	313 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	314 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	315 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	316 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	317 "string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	318 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	319 "doc": "Structure hint, corresponds to JSON-LD `@container` directive.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	320 "name": "https://w3id.org/cwl/salad#JsonldPredicate/_container"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	321 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	322 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	323 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	324 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	325 "boolean"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	326 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	327 "doc": "If true and `_type` is `@id` this indicates that the parent field must\nbe resolved according to identity resolution rules instead of link\nresolution rules. In addition, the field value is considered an\nassertion that the linked value exists; absence of an object in the loaded document\nwith the URI is not an error.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	328 "name": "https://w3id.org/cwl/salad#JsonldPredicate/identity"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	329 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	330 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	331 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	332 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	333 "boolean"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	334 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	335 "doc": "If true, this indicates that link validation traversal must stop at\nthis field. This field (it is is a URI) or any fields under it (if it\nis an object or array) are not subject to link checking.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	336 "name": "https://w3id.org/cwl/salad#JsonldPredicate/noLinkCheck"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	337 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	338 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	339 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	340 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	341 "string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	342 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	343 "doc": "If the value of the field is a JSON object, it must be transformed\ninto an array of JSON objects, where each key-value pair from the\nsource JSON object is a list item, the list items must be JSON objects,\nand the key is assigned to the field specified by `mapSubject`.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	344 "name": "https://w3id.org/cwl/salad#JsonldPredicate/mapSubject"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	345 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	346 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	347 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	348 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	349 "string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	350 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	351 "doc": "Only applies if `mapSubject` is also provided. If the value of the\nfield is a JSON object, it is transformed as described in `mapSubject`,\nwith the addition that when the value of a map item is not an object,\nthe item is transformed to a JSON object with the key assigned to the\nfield specified by `mapSubject` and the value assigned to the field\nspecified by `mapPredicate`.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	352 "name": "https://w3id.org/cwl/salad#JsonldPredicate/mapPredicate"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	353 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	354 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	355 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	356 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	357 "int"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	358 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	359 "doc": "If the field contains a relative reference, it must be resolved by\nsearching for valid document references in each successive parent scope\nin the document fragment. For example, a reference of `foo` in the\ncontext `#foo/bar/baz` will first check for the existence of\n`#foo/bar/baz/foo`, followed by `#foo/bar/foo`, then `#foo/foo` and\nthen finally `#foo`. The first valid URI in the search order shall be\nused as the fully resolved value of the identifier. The value of the\nrefScope field is the specified number of levels from the containing\nidentifer scope before starting the search, so if `refScope: 2` then\n\"baz\" and \"bar\" must be stripped to get the base `#foo` and search\n`#foo/foo` and the `#foo`. The last scope searched must be the top\nlevel scope before determining if the identifier cannot be resolved.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	360 "name": "https://w3id.org/cwl/salad#JsonldPredicate/refScope"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	361 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	362 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	363 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	364 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	365 "boolean"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	366 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	367 "doc": "Field must be expanded based on the the Schema Salad type DSL.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	368 "name": "https://w3id.org/cwl/salad#JsonldPredicate/typeDSL"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	369 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	370 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	371 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	372 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	373 "boolean"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	374 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	375 "doc": "Field must be expanded based on the the Schema Salad secondary file DSL.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	376 "name": "https://w3id.org/cwl/salad#JsonldPredicate/secondaryFilesDSL"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	377 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	378 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	379 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	380 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	381 "string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	382 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	383 "doc": "Append the subscope to the current scope when performing\nidentifier resolution to objects under this field.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	384 "name": "https://w3id.org/cwl/salad#JsonldPredicate/subscope"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	385 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	386 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	387 "doc": "Attached to a record field to define how the parent record field is handled for\nURI resolution and JSON-LD context generation.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	388 "name": "https://w3id.org/cwl/salad#JsonldPredicate"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	389 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	390 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	391 "type": "record",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	392 "fields": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	393 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	394 "type": "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	395 "doc": "The data type to be replaced",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	396 "name": "https://w3id.org/cwl/salad#SpecializeDef/specializeFrom",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	397 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	398 "_id": "https://w3id.org/cwl/salad#specializeFrom",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	399 "_type": "@id",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	400 "refScope": 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	401 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	402 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	403 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	404 "type": "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	405 "doc": "The new data type to replace with",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	406 "name": "https://w3id.org/cwl/salad#SpecializeDef/specializeTo",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	407 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	408 "_id": "https://w3id.org/cwl/salad#specializeTo",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	409 "_type": "@id",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	410 "refScope": 1
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	411 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	412 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	413 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	414 "name": "https://w3id.org/cwl/salad#SpecializeDef"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	415 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	416 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	417 "type": "record",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	418 "abstract": true,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	419 "name": "https://w3id.org/cwl/salad#NamedType",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	420 "fields": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	421 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	422 "type": "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	423 "doc": "The identifier for this type",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	424 "name": "https://w3id.org/cwl/salad#NamedType/name",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	425 "jsonldPredicate": "@id"
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26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	427 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	428 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	429 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	430 "boolean"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	431 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	432 "default": true,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	433 "name": "https://w3id.org/cwl/salad#NamedType/inVocab",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	434 "doc": "If \"true\" (the default), include the short name of this type\nin the vocabulary. The vocabulary are all the symbols (field\nnames and other identifiers, such as classes and enum values)\nwhich can be used in the document without a namespace prefix.\nThese are the keys of the JSON-LD context. If false, do not\ninclude the short name in the vocabulary.\n\nThis is useful for specifying schema extensions that will be\nincluded in validation without introducing ambiguity by\nintroducing non-standard terms into the vocabulary.\n"
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26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	436 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	437 "docParent": "https://w3id.org/cwl/salad#Schema"
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26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	439 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	440 "fields": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	441 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	442 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	443 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	444 "string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	445 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	446 "doc": "Hint to indicate that during documentation generation, documentation\nfor this type should appear in a subsection under `docParent`.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	447 "name": "https://w3id.org/cwl/salad#DocType/docParent",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	448 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	449 "_id": "https://w3id.org/cwl/salad#docParent",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	450 "_type": "@id"
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26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	453 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	454 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	455 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	456 "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	457 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	458 "items": "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	459 "type": "array"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	460 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	461 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	462 "doc": "Hint to indicate that during documentation generation, documentation\nfor `docChild` should appear in a subsection under this type.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	463 "name": "https://w3id.org/cwl/salad#DocType/docChild",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	464 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	465 "_id": "https://w3id.org/cwl/salad#docChild",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	466 "_type": "@id"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	467 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	468 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	469 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	470 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	471 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	472 "string"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	473 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	474 "doc": "Hint to indicate that during documentation generation, documentation\nfor this type should appear after the `docAfter` section at the same\nlevel.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	475 "name": "https://w3id.org/cwl/salad#DocType/docAfter",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	476 "jsonldPredicate": {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	477 "_id": "https://w3id.org/cwl/salad#docAfter",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	478 "_type": "@id"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	479 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	480 }
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	481 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	482 "docParent": "https://w3id.org/cwl/salad#Schema",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	483 "name": "https://w3id.org/cwl/salad#DocType",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	484 "abstract": true,
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	485 "type": "record",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	486 "extends": "https://w3id.org/cwl/salad#Documented"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	487 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	488 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	489 "fields": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	490 {
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	491 "type": [
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	492 "null",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	493 "string",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	494 "JsonldPredicate"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	495 ],
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	496 "doc": "Annotate this type with linked data context.\n",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	497 "name": "https://w3id.org/cwl/salad#SchemaDefinedType/jsonldPredicate",
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	498 "jsonldPredicate": "sld:jsonldPredicate"
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	499 },
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783" shellac parents: diff changeset	500 {

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26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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5 "# Semantic Annotations for Linked Avro Data (SALAD)\n\nAuthor:\n\n* Peter Amstutz <pamstutz@veritasgenetics.com>, Veritas Genetics\n\nContributors:\n\n* The developers of Apache Avro\n* The developers of JSON-LD\n* Neboj\u0161a Tijani\u0107 <nebojsa.tijanic@sbgenomics.com>, Seven Bridges Genomics\n\n# Abstract\n\nSalad is a schema language for describing structured linked data documents\nin JSON or YAML documents. A Salad schema provides rules for\npreprocessing, structural validation, and link checking for documents\ndescribed by a Salad schema. Salad builds on JSON-LD and the Apache Avro\ndata serialization system, and extends Avro with features for rich data\nmodeling such as inheritance, template specialization, object identifiers,\nand object references. Salad was developed to provide a bridge between the\nrecord oriented data modeling supported by Apache Avro and the Semantic\nWeb.\n\n# Status of This Document\n\nThis document is the product of the [Common Workflow Language working\ngroup](https://groups.google.com/forum/#!forum/common-workflow-language). The\nlatest version of this document is available in the \"schema_salad\" repository at\n\nhttps://github.com/common-workflow-language/schema_salad\n\nThe products of the CWL working group (including this document) are made available\nunder the terms of the Apache License, version 2.0.\n\n\n\n# Introduction\n\nThe JSON data model is an extremely popular way to represent structured\ndata. It is attractive because of its relative simplicity and is a\nnatural fit with the standard types of many programming languages.\nHowever, this simplicity means that basic JSON lacks expressive features\nuseful for working with complex data structures and document formats, such\nas schemas, object references, and namespaces.\n\nJSON-LD is a W3C standard providing a way to describe how to interpret a\nJSON document as Linked Data by means of a \"context\". JSON-LD provides a\npowerful solution for representing object references and namespaces in JSON\nbased on standard web URIs, but is not itself a schema language. Without a\nschema providing a well defined structure, it is difficult to process an\narbitrary JSON-LD document as idiomatic JSON because there are many ways to\nexpress the same data that are logically equivalent but structurally\ndistinct.\n\nSeveral schema languages exist for describing and validating JSON data,\nsuch as the Apache Avro data serialization system, however none understand\nlinked data. As a result, to fully take advantage of JSON-LD to build the\nnext generation of linked data applications, one must maintain separate\nJSON schema, JSON-LD context, RDF schema, and human documentation, despite\nsignificant overlap of content and obvious need for these documents to stay\nsynchronized.\n\nSchema Salad is designed to address this gap. It provides a schema\nlanguage and processing rules for describing structured JSON content\npermitting URI resolution and strict document validation. The schema\nlanguage supports linked data through annotations that describe the linked\ndata interpretation of the content, enables generation of JSON-LD context\nand RDF schema, and production of RDF triples by applying the JSON-LD\ncontext. The schema language also provides for robust support of inline\ndocumentation.\n\n## Introduction to v1.1\n\nThis is the third version of of the Schema Salad specification. It is\ndeveloped concurrently with v1.1 of the Common Workflow Language for use in\nspecifying the Common Workflow Language, however Schema Salad is intended to be\nuseful to a broader audience. Compared to the v1.0 schema salad\nspecification, the following changes have been made:\n\n* Support for `default` values on record fields to specify default values\n* Add subscoped fields (fields which introduce a new inner scope for identifiers)\n* Add the *inVocab* flag (default true) to indicate if a type is added to the vocabulary of well known terms or must be prefixed\n* Add *secondaryFilesDSL* micro DSL (domain specific language) to convert text strings to a secondaryFiles record type used in CWL\n* The `$mixin` feature has been removed from the specification, as it\n is poorly documented, not included in conformance testing,\n and not widely supported.\n\n## References to Other Specifications\n\n**Javascript Object Notation (JSON)**: http://json.org\n\n**JSON Linked Data (JSON-LD)**: http://json-ld.org\n\n**YAML**: https://yaml.org/spec/1.2/spec.html\n\n**Avro**: https://avro.apache.org/docs/current/spec.html\n\n**Uniform Resource Identifier (URI) Generic Syntax**: https://tools.ietf.org/html/rfc3986)\n\n**Resource Description Framework (RDF)**: http://www.w3.org/RDF/\n\n**UTF-8**: https://www.ietf.org/rfc/rfc2279.txt)\n\n## Scope\n\nThis document describes the syntax, data model, algorithms, and schema\nlanguage for working with Salad documents. It is not intended to document\na specific implementation of Salad, however it may serve as a reference for\nthe behavior of conforming implementations.\n\n## Terminology\n\nThe terminology used to describe Salad documents is defined in the Concepts\nsection of the specification. The terms defined in the following list are\nused in building those definitions and in describing the actions of an\nSalad implementation:\n\n**may**: Conforming Salad documents and Salad implementations are permitted but\nnot required to be interpreted as described.\n\n**must**: Conforming Salad documents and Salad implementations are required\nto be interpreted as described; otherwise they are in error.\n\n**error**: A violation of the rules of this specification; results are\nundefined. Conforming implementations may detect and report an error and may\nrecover from it.\n\n**fatal error**: A violation of the rules of this specification; results\nare undefined. Conforming implementations must not continue to process the\ndocument and may report an error.\n\n**at user option**: Conforming software may or must (depending on the modal verb in\nthe sentence) behave as described; if it does, it must provide users a means to\nenable or disable the behavior described.\n\n# Document model\n\n## Data concepts\n\nAn **object** is a data structure equivalent to the \"object\" type in JSON,\nconsisting of a unordered set of name/value pairs (referred to here as\n**fields**) and where the name is a string and the value is a string, number,\nboolean, array, or object.\n\nA **document** is a file containing a serialized object, or an array of\nobjects.\n\nA **document type** is a class of files that share a common structure and\nsemantics.\n\nA **document schema** is a formal description of the grammar of a document type.\n\nA **base URI** is a context-dependent URI used to resolve relative references.\n\nAn **identifier** is a URI that designates a single document or single\nobject within a document.\n\nA **vocabulary** is the set of symbolic field names and enumerated symbols defined\nby a document schema, where each term maps to absolute URI.\n\n## Syntax\n\nConforming Salad v1.1 documents are serialized and loaded using a\nsubset of YAML 1.2 syntax and UTF-8 text encoding. Salad documents\nare written using the [JSON-compatible subset of YAML described in\nsection 10.2](https://yaml.org/spec/1.2/spec.html#id2803231). The\nfollowing features of YAML must not be used in conforming Salad\ndocuments:\n\n* Use of explicit node tags with leading `!` or `!!`\n* Use of anchors with leading `&` and aliases with leading `*`\n* %YAML directives\n* %TAG directives\n\nIt is a fatal error if the document is not valid YAML.\n\nA Salad document must consist only of either a single root object or an\narray of objects.\n\n## Document context\n\n### Implied context\n\nThe implicit context consists of the vocabulary defined by the schema and\nthe base URI. By default, the base URI must be the URI that was used to\nload the document. It may be overridden by an explicit context.\n\n### Explicit context\n\nIf a document consists of a root object, this object may contain the\nfields `$base`, `$namespaces`, `$schemas`, and `$graph`:\n\n * `$base`: Must be a string. Set the base URI for the document used to\n resolve relative references.\n\n * `$namespaces`: Must be an object with strings as values. The keys of\n the object are namespace prefixes used in the document; the values of\n the object are the prefix expansions.\n\n * `$schemas`: Must be an array of strings. This field may list URI\n references to documents in RDF-XML format which will be queried for RDF\n schema data. The subjects and predicates described by the RDF schema\n may provide additional semantic context for the document, and may be\n used for validation of prefixed extension fields found in the document.\n\nOther directives beginning with `$` must be ignored.\n\n## Document graph\n\nIf a document consists of a single root object, this object may contain the\nfield `$graph`. This field must be an array of objects. If present, this\nfield holds the primary content of the document. A document that consists\nof array of objects at the root is an implicit graph.\n\n## Document metadata\n\nIf a document consists of a single root object, metadata about the\ndocument, such as authorship, may be declared in the root object.\n\n## Document schema\n\nDocument preprocessing, link validation and schema validation require a\ndocument schema. A schema may consist of:\n\n * At least one record definition object which defines valid fields that\n make up a record type. Record field definitions include the valid types\n that may be assigned to each field and annotations to indicate fields\n that represent identifiers and links, described below in \"Semantic\n Annotations\".\n\n * Any number of enumerated type objects which define a set of finite set of symbols that are\n valid value of the type.\n\n * Any number of documentation objects which allow in-line documentation of the schema.\n\nThe schema for defining a salad schema (the metaschema) is described in\ndetail in the [Schema](#Schema) section.\n\n## Record field annotations\n\nIn a document schema, record field definitions may include the field\n`jsonldPredicate`, which may be either a string or object. Implementations\nmust use the following document preprocessing of fields by the following\nrules:\n\n * If the value of `jsonldPredicate` is `@id`, the field is an identifier\n field.\n\n * If the value of `jsonldPredicate` is an object, and contains that\n object contains the field `_type` with the value `@id`, the field is a\n link field subject to [link validation](#Link_validation).\n\n * If the value of `jsonldPredicate` is an object which contains the\n field `_type` with the value `@vocab`, the field value is subject to\n [vocabulary resolution](#Vocabulary_resolution).\n\n## Document traversal\n\nTo perform document document preprocessing, link validation and schema\nvalidation, the document must be traversed starting from the fields or\narray items of the root object or array and recursively visiting each child\nitem which contains an object or arrays.\n\n## Short names\n\nThe \"short name\" of an fully qualified identifier is the portion of\nthe identifier following the final slash `/` of either the fragment\nidentifier following `#` or the path portion, if there is no fragment.\nSome examples:\n\n* the short name of `http://example.com/foo` is `foo`\n* the short name of `http://example.com/#bar` is `bar`\n* the short name of `http://example.com/foo/bar` is `bar`\n* the short name of `http://example.com/foo#bar` is `bar`\n* the short name of `http://example.com/#foo/bar` is `bar`\n* the short name of `http://example.com/foo#bar/baz` is `baz`\n\n## Inheritance and specialization\n\nA record definition may inherit from one or more record definitions\nwith the `extends` field. This copies the fields defined in the\nparent record(s) as the base for the new record. A record definition\nmay `specialize` type declarations of the fields inherited from the\nbase record. For each field inherited from the base record, any\ninstance of the type in `specializeFrom` is replaced with the type in\n`specializeTo`. The type in `specializeTo` should extend from the\ntype in `specializeFrom`.\n\nA record definition may be `abstract`. This means the record\ndefinition is not used for validation on its own, but may be extended\nby other definitions. If an abstract type appears in a field\ndefinition, it is logically replaced with a union of all concrete\nsubtypes of the abstract type. In other words, the field value does\nnot validate as the abstract type, but must validate as some concrete\ntype that inherits from the abstract type.\n\n# Document preprocessing\n\nAfter processing the explicit context (if any), document preprocessing\nbegins. Starting from the document root, object fields values or array\nitems which contain objects or arrays are recursively traversed\ndepth-first. For each visited object, field names, identifier fields, link\nfields, vocabulary fields, and `$import` and `$include` directives must be\nprocessed as described in this section. The order of traversal of child\nnodes within a parent node is undefined.\n",

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6 "## Field name resolution\n\nThe document schema declares the vocabulary of known field names. During\npreprocessing traversal, field name in the document which are not part of\nthe schema vocabulary must be resolved to absolute URIs. Under \"strict\"\nvalidation, it is an error for a document to include fields which are not\npart of the vocabulary and not resolvable to absolute URIs. Fields names\nwhich are not part of the vocabulary are resolved using the following\nrules:\n\n* If an field name URI begins with a namespace prefix declared in the\ndocument context (`@context`) followed by a colon `:`, the prefix and\ncolon must be replaced by the namespace declared in `@context`.\n\n* If there is a vocabulary term which maps to the URI of a resolved\nfield, the field name must be replace with the vocabulary term.\n\n* If a field name URI is an absolute URI consisting of a scheme and path\nand is not part of the vocabulary, no processing occurs.\n\nField name resolution is not relative. It must not be affected by the\nbase URI.\n\n### Field name resolution example\n\nGiven the following schema:\n\n```\n",

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7 "{\n \"$namespaces\": {\n \"acid\": \"http://example.com/acid#\"\n },\n \"$graph\": [{\n \"name\": \"ExampleType\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"base\",\n \"type\": \"string\",\n \"jsonldPredicate\": \"http://example.com/base\"\n }]\n }]\n}\n",

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8 "```\n\nProcess the following example:\n\n```\n",

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9 " {\n \"base\": \"one\",\n \"form\": {\n \"http://example.com/base\": \"two\",\n \"http://example.com/three\": \"three\",\n },\n \"acid:four\": \"four\"\n }\n",

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10 "```\n\nThis becomes:\n\n```\n",

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11 " {\n \"base\": \"one\",\n \"form\": {\n \"base\": \"two\",\n \"http://example.com/three\": \"three\",\n },\n \"http://example.com/acid#four\": \"four\"\n }\n",

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12 "```\n",

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13 "## Identifier resolution\n\nThe schema may designate one or more fields as identifier fields to identify\nspecific objects. Processing must resolve relative identifiers to absolute\nidentifiers using the following rules:\n\n * If an identifier URI begins with `#` it is a current document\n fragment identifier. It is resolved relative to the base URI by\n setting or replacing the fragment portion of the base URI.\n\n * If an identifier URI contains `#` in some other position is a\n relative URI with fragment identifier. It is resolved relative\n to the base URI by stripping the last path segment from the base\n URI and adding the identifier followed by the fragment.\n\n * If an identifier URI does not contain a scheme and does not\n contain `#` it is a parent relative fragment identifier.\n\n * If an identifier URI is a parent relative fragment identifier\n and the base URI does not contain a document fragment, set the\n document fragment on the base URI.\n\n * If an identifier URI is a parent relative fragment identifier\n and the object containing this identifier is assigned to a\n parent object field defined with `subscope` in\n `jsonldPredicate`, append a slash `/` to the base URI fragment\n followed by the value of the parent field `subscope`. Then\n append the identifier as described in the next rule.\n\n * If an identifier URI is a parent relative fragment identifier\n and the base URI contains a document fragment, append a slash\n `/` to the fragment followed by the identifier field to the\n fragment portion of the base URI.\n\n * If an identifier URI begins with a namespace prefix declared in\n `$namespaces` followed by a colon `:`, the prefix and colon must be\n replaced by the namespace declared in `$namespaces`.\n\n * If an identifier URI is an absolute URI consisting of a scheme and path,\n no processing occurs.\n\nWhen preprocessing visits a node containing an identifier, that identifier\nmust be used as the base URI to process child nodes.\n\nIt is an error for more than one object in a document to have the same\nabsolute URI.\n\n### Identifier resolution example\n\nGiven the following schema:\n\n```\n",

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14 "{\n \"$namespaces\": {\n \"acid\": \"http://example.com/acid#\"\n },\n \"$graph\": [{\n \"name\": \"ExampleType\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"id\",\n \"type\": \"string\",\n \"jsonldPredicate\": \"@id\"\n }]}, {\n \"name\": \"SubscopeType\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"subscopeField\",\n \"type\": \"ExampleType\",\n \"jsonldPredicate\": {\n \"subscope\": \"thisIsASubscope\"\n }\n }]\n }]\n}\n",

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15 "```\n\nProcess the following example:\n\n```\n",

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16 " {\n \"id\": \"http://example.com/base\",\n \"form\": {\n \"id\": \"one\",\n \"things\": [\n {\n \"id\": \"two\"\n },\n {\n \"id\": \"#three\",\n },\n {\n \"id\": \"four#five\",\n },\n {\n \"id\": \"acid:six\",\n },\n {\n \"subscopeField\": {\n \"id\": \"seven\"\n }\n }\n ],\n }\n }\n",

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17 "```\n\nThis becomes:\n\n```\n",

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18 "{\n \"id\": \"http://example.com/base\",\n \"form\": {\n \"id\": \"http://example.com/base#one\",\n \"things\": [\n {\n \"id\": \"http://example.com/base#one/two\"\n },\n {\n \"id\": \"http://example.com/base#three\"\n },\n {\n \"id\": \"http://example.com/four#five\",\n },\n {\n \"id\": \"http://example.com/acid#six\",\n },\n {\n \"subscopeField\": {\n \"id\": \"http://example.com/base#one/thisIsASubscope/seven\"\n }\n }\n ],\n }\n}\n",

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19 "```\n",

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20 "## Link resolution\n\nThe schema may designate one or more fields as link fields reference other\nobjects. Processing must resolve links to either absolute URIs using the\nfollowing rules:\n\n* If a reference URI is prefixed with `#` it is a relative\nfragment identifier. It is resolved relative to the base URI by setting\nor replacing the fragment portion of the base URI.\n\n* If a reference URI does not contain a scheme and is not prefixed with `#`\nit is a path relative reference. If the reference URI contains `#` in any\nposition other than the first character, the reference URI must be divided\ninto a path portion and a fragment portion split on the first instance of\n`#`. The path portion is resolved relative to the base URI by the following\nrule: if the path portion of the base URI ends in a slash `/`, append the\npath portion of the reference URI to the path portion of the base URI. If\nthe path portion of the base URI does not end in a slash, replace the final\npath segment with the path portion of the reference URI. Replace the\nfragment portion of the base URI with the fragment portion of the reference\nURI.\n\n* If a reference URI begins with a namespace prefix declared in `$namespaces`\nfollowed by a colon `:`, the prefix and colon must be replaced by the\nnamespace declared in `$namespaces`.\n\n* If a reference URI is an absolute URI consisting of a scheme and path,\nno processing occurs.\n\nLink resolution must not affect the base URI used to resolve identifiers\nand other links.\n\n### Link resolution example\n\nGiven the following schema:\n\n```\n",

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21 "{\n \"$namespaces\": {\n \"acid\": \"http://example.com/acid#\"\n },\n \"$graph\": [{\n \"name\": \"ExampleType\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"link\",\n \"type\": \"string\",\n \"jsonldPredicate\": {\n \"_type\": \"@id\"\n }\n }]\n }]\n}\n",

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22 "```\n\nProcess the following example:\n\n```\n",

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23 "{\n \"$base\": \"http://example.com/base\",\n \"link\": \"http://example.com/base/zero\",\n \"form\": {\n \"link\": \"one\",\n \"things\": [\n {\n \"link\": \"two\"\n },\n {\n \"link\": \"#three\",\n },\n {\n \"link\": \"four#five\",\n },\n {\n \"link\": \"acid:six\",\n }\n ]\n }\n}\n",

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24 "```\n\nThis becomes:\n\n```\n",

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25 "{\n \"$base\": \"http://example.com/base\",\n \"link\": \"http://example.com/base/zero\",\n \"form\": {\n \"link\": \"http://example.com/one\",\n \"things\": [\n {\n \"link\": \"http://example.com/two\"\n },\n {\n \"link\": \"http://example.com/base#three\"\n },\n {\n \"link\": \"http://example.com/four#five\",\n },\n {\n \"link\": \"http://example.com/acid#six\",\n }\n ]\n }\n}\n",

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26 "```\n",

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27 "## Vocabulary resolution\n\n The schema may designate one or more vocabulary fields which use\n terms defined in the vocabulary. The vocabulary are the short\n names of all the identifiers in the schema. Processing must\n resolve vocabulary fields to either vocabulary terms or absolute\n URIs by first applying the link resolution rules defined above,\n then applying the following additional rule:\n\n * If a reference URI is a vocabulary field, and there is a vocabulary\n term which maps to the resolved URI, the reference must be replace with\n the vocabulary term.\n\n### Vocabulary resolution example\n\nGiven the following schema:\n\n```\n",

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28 "{\n \"$namespaces\": {\n \"acid\": \"http://example.com/acid#\"\n },\n \"$graph\": [{\n \"name\": \"Colors\",\n \"type\": \"enum\",\n \"symbols\": [\"acid:red\"]\n },\n {\n \"name\": \"ExampleType\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"voc\",\n \"type\": \"string\",\n \"jsonldPredicate\": {\n \"_type\": \"@vocab\"\n }\n }]\n }]\n}\n",

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29 "```\n\nProcess the following example:\n\n```\n",

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30 " {\n \"form\": {\n \"things\": [\n {\n \"voc\": \"red\",\n },\n {\n \"voc\": \"http://example.com/acid#red\",\n },\n {\n \"voc\": \"http://example.com/acid#blue\",\n }\n ]\n }\n }\n",

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31 "```\n\nThis becomes:\n\n```\n",

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32 " {\n \"form\": {\n \"things\": [\n {\n \"voc\": \"red\",\n },\n {\n \"voc\": \"red\",\n },\n {\n \"voc\": \"http://example.com/acid#blue\",\n }\n ]\n }\n }\n",

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33 "```\n",

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34 "## Import\n\nDuring preprocessing traversal, an implementation must resolve `$import`\ndirectives. An `$import` directive is an object consisting of exactly one\nfield `$import` specifying resource by URI string. It is an error if there\nare additional fields in the `$import` object, such additional fields must\nbe ignored.\n\nThe URI string must be resolved to an absolute URI using the link\nresolution rules described previously. Implementations must support\nloading from `file`, `http` and `https` resources. The URI referenced by\n`$import` must be loaded and recursively preprocessed as a Salad document.\nThe external imported document does not inherit the context of the\nimporting document, and the default base URI for processing the imported\ndocument must be the URI used to retrieve the imported document. If the\n`$import` URI includes a document fragment, the fragment must be excluded\nfrom the base URI used to preprocess the imported document.\n\nOnce loaded and processed, the `$import` node is replaced in the document\nstructure by the object or array yielded from the import operation.\n\nURIs may reference document fragments which refer to specific an object in\nthe target document. This indicates that the `$import` node must be\nreplaced by only the object with the appropriate fragment identifier.\n\nIt is a fatal error if an import directive refers to an external resource\nor resource fragment which does not exist or is not accessible.\n\n### Import example\n\nimport.yml:\n```\n{\n \"hello\": \"world\"\n}\n\n```\n\nparent.yml:\n```\n{\n \"form\": {\n \"bar\": {\n \"$import\": \"import.yml\"\n }\n }\n}\n\n```\n\nThis becomes:\n\n```\n{\n \"form\": {\n \"bar\": {\n \"hello\": \"world\"\n }\n }\n}\n```\n\n## Include\n\nDuring preprocessing traversal, an implementation must resolve `$include`\ndirectives. An `$include` directive is an object consisting of exactly one\nfield `$include` specifying a URI string. It is an error if there are\nadditional fields in the `$include` object, such additional fields must be\nignored.\n\nThe URI string must be resolved to an absolute URI using the link\nresolution rules described previously. The URI referenced by `$include` must\nbe loaded as a text data. Implementations must support loading from\n`file`, `http` and `https` resources. Implementations may transcode the\ncharacter encoding of the text data to match that of the parent document,\nbut must not interpret or parse the text document in any other way.\n\nOnce loaded, the `$include` node is replaced in the document structure by a\nstring containing the text data loaded from the resource.\n\nIt is a fatal error if an import directive refers to an external resource\nwhich does not exist or is not accessible.\n\n### Include example\n\nparent.yml:\n```\n{\n \"form\": {\n \"bar\": {\n \"$include\": \"include.txt\"\n }\n }\n}\n\n```\n\ninclude.txt:\n```\nhello world\n\n```\n\nThis becomes:\n\n```\n{\n \"form\": {\n \"bar\": \"hello world\"\n }\n}\n```\n",

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35 "## Identifier maps\n\nThe schema may designate certain fields as having a `mapSubject`. If the\nvalue of the field is a JSON object, it must be transformed into an array of\nJSON objects. Each key-value pair from the source JSON object is a list\nitem, each list item must be a JSON objects, and the value of the key is\nassigned to the field specified by `mapSubject`.\n\nFields which have `mapSubject` specified may also supply a `mapPredicate`.\nIf the value of a map item is not a JSON object, the item is transformed to a\nJSON object with the key assigned to the field specified by `mapSubject` and\nthe value assigned to the field specified by `mapPredicate`.\n\n### Identifier map example\n\nGiven the following schema:\n\n```\n",

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36 "{\n \"$graph\": [{\n \"name\": \"MappedType\",\n \"type\": \"record\",\n \"documentRoot\": true,\n \"fields\": [{\n \"name\": \"mapped\",\n \"type\": {\n \"type\": \"array\",\n \"items\": \"ExampleRecord\"\n },\n \"jsonldPredicate\": {\n \"mapSubject\": \"key\",\n \"mapPredicate\": \"value\"\n }\n }],\n },\n {\n \"name\": \"ExampleRecord\",\n \"type\": \"record\",\n \"fields\": [{\n \"name\": \"key\",\n \"type\": \"string\"\n }, {\n \"name\": \"value\",\n \"type\": \"string\"\n }\n ]\n }]\n}\n",

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37 "```\n\nProcess the following example:\n\n```\n",

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38 "{\n \"mapped\": {\n \"shaggy\": {\n \"value\": \"scooby\"\n },\n \"fred\": \"daphne\"\n }\n}",

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39 "```\n\nThis becomes:\n\n```\n",

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40 "{\n \"mapped\": [\n {\n \"value\": \"daphne\",\n \"key\": \"fred\"\n },\n {\n \"value\": \"scooby\",\n \"key\": \"shaggy\"\n }\n ]\n}",

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41 "```\n",

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42 "## Domain Specific Language for types\n\nFields may be tagged `typeDSL: true` in `jsonldPredicate`. If so, the field is expanded using the\nfollowing micro-DSL for schema salad types:\n\n* If the type ends with a question mark `?`, the question mark is stripped off and the type is expanded to a union with `null`\n* If the type ends with square brackets `[]` it is expanded to an array with items of the preceeding type symbol\n* The type may end with both `[]?` to indicate it is an optional array.\n* Identifier resolution is applied after type DSL expansion.\n\n### Type DSL example\n\nGiven the following schema:\n\n```\n",

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43 "{\n \"$graph\": [\n {\"$import\": \"metaschema_base.yml\"},\n {\n \"name\": \"TypeDSLExample\",\n \"type\": \"record\",\n \"documentRoot\": true,\n \"fields\": [{\n \"name\": \"extype\",\n \"type\": \"string\",\n \"jsonldPredicate\": {\n _type: \"@vocab\",\n \"typeDSL\": true\n }\n }]\n }]\n}\n",

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44 "```\n\nProcess the following example:\n\n```\n",

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45 "[{\n \"extype\": \"string\"\n}, {\n \"extype\": \"string?\"\n}, {\n \"extype\": \"string[]\"\n}, {\n \"extype\": \"string[]?\"\n}]\n",

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46 "```\n\nThis becomes:\n\n```\n",

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47 "[\n {\n \"extype\": \"string\"\n }, \n {\n \"extype\": [\n \"null\", \n \"string\"\n ]\n }, \n {\n \"extype\": {\n \"type\": \"array\", \n \"items\": \"string\"\n }\n }, \n {\n \"extype\": [\n \"null\", \n {\n \"type\": \"array\", \n \"items\": \"string\"\n }\n ]\n }\n]\n",

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48 "```\n",

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49 "## Domain Specific Language for secondary files\n\nFields may be tagged `secondaryFilesDSL: true` in `jsonldPredicate`. If so, the field is expanded using the\nfollowing micro-DSL for secondary files:\n\n* If the value is a string, it is transformed to an object with two fields `pattern` and `required`\n* By default, the value of `required` is `null` (this indicates default behavior, which may be based on the context)\n* If the value ends with a question mark `?` the question mark is\n stripped off and the value of the field `required` is set to `False`\n* The remaining value is assigned to the field `pattern`\n\n### Type DSL example\n\nGiven the following schema:\n\n```\n",

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50 "{\n \"$graph\": [\n {\n \"name\": \"SecondaryFilesDSLExample\",\n \"type\": \"record\",\n \"documentRoot\": true,\n \"fields\": [{\n \"name\": \"secondaryFiles\",\n \"type\": \"string\",\n \"jsonldPredicate\": {\n _type: \"@vocab\",\n \"secondaryFilesDSL\": true\n }\n }]\n }]\n}\n",

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51 "```\n\nProcess the following example:\n\n```\n",

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52 "[{\n \"secondaryFiles\": \".bai\"\n}, {\n \"secondaryFiles\": \".bai?\"\n}, {\n \"secondaryFiles\": {\n \"pattern\": \".bai?\"\n}, {\n \"secondaryFiles\": {\n \"pattern\": \".bai?\",\n \"required\": true\n}]\n",

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53 "```\n\nThis becomes:\n\n```\n",

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54 "[\n {\n \"secondaryFiles\": {\n \"pattern\": \".bai\",\n \"required\": null\n },\n {\n \"secondaryFiles\": {\n \"pattern\": \".bai\",\n \"required\": false\n },\n {\n \"secondaryFiles\": {\n \"pattern\": \".bai?\"\n },\n {\n \"secondaryFiles\": {\n \"pattern\": \".bai?\",\n \"required\": true\n },\n]\n",

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55 "```\n"

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56 ],

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57 "name": "https://w3id.org/cwl/salad#Semantic_Annotations_for_Linked_Avro_Data"

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58 },

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59 {

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60 "type": "documentation",

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61 "doc": "# Link validation\n\nOnce a document has been preprocessed, an implementation may validate\nlinks. The link validation traversal may visit fields which the schema\ndesignates as link fields and check that each URI references an existing\nobject in the current document, an imported document, file system, or\nnetwork resource. Failure to validate links may be a fatal error. Link\nvalidation behavior for individual fields may be modified by `identity` and\n`noLinkCheck` in the `jsonldPredicate` section of the field schema.\n",

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62 "name": "https://w3id.org/cwl/salad#Link_Validation"

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63 },

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64 {

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65 "type": "documentation",

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66 "doc": "# Validating a document against a schema\n\nTo validate a document against the schema, first [apply\npreprocessing](#Document_preprocessing), then, use the following\nalgorithm.\n\n1. The document root must be an object or a list. If the document root is an\n object containing the field `$graph` (which must be a list of\n objects), then validation applies to each object in the list.\n2. For each object, attempt to validate as one of the record types\n flagged with `documentRoot: true`.\n3. To validate a record, go through `fields` and recursively\n validate each field of the object.\n4. For fields with a list of types (type union), go through each\n type in the list and recursively validate the type. For the\n field to be valid, at least one type in the union must be valid.\n5. Missing fields are considered `null`. To validate, the allowed types\n for the field must include `null`\n6. Primitive types are null, boolean, int, long, float, double,\n string. To validate, the value in the document must have one\n of these type. For numerics, the value appearing in the\n document must fit into the specified type.\n7. To validate an array, the value in the document must be a list,\n and each item in the list must recursively validate as a type\n in `items`.\n8. To validate an enum, the value in the document be a string, and\n the value must be equal to the short name of one of the values\n listed in `symbols`.\n9. As a special case, a field with the `Expression` type validates string values\n which contain a CWL parameter reference or expression in the form\n `$(...)` or `${...}`\n",

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67 "name": "https://w3id.org/cwl/salad#Schema_Validation"

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68 },

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69 {

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70 "type": "documentation",

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71 "doc": "# Schema\n",

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72 "name": "https://w3id.org/cwl/salad#Schema"

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73 },

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74 {

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75 "type": "record",

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76 "abstract": true,

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77 "name": "https://w3id.org/cwl/salad#Documented",

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78 "fields": [

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79 {

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80 "type": [

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81 "null",

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82 "string",

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83 {

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84 "items": "string",

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85 "type": "array"

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86 }

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87 ],

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88 "doc": "A documentation string for this object, or an array of strings which should be concatenated.",

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89 "name": "https://w3id.org/cwl/salad#Documented/doc",

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90 "jsonldPredicate": "rdfs:comment"

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91 }

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92 ],

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93 "docParent": "https://w3id.org/cwl/salad#Schema"

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94 },

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95 {

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96 "type": "enum",

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97 "doc": [

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98 "Salad data types are based on Avro schema declarations. Refer to the\n[Avro schema declaration documentation](https://avro.apache.org/docs/current/spec.html#schemas) for\ndetailed information.\n",

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99 "null: no value",

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100 "boolean: a binary value",

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101 "int: 32-bit signed integer",

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102 "long: 64-bit signed integer",

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103 "float: single precision (32-bit) IEEE 754 floating-point number",

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104 "double: double precision (64-bit) IEEE 754 floating-point number",

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105 "string: Unicode character sequence"

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106 ],

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107 "name": "https://w3id.org/cwl/salad#PrimitiveType",

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108 "symbols": [

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109 "https://w3id.org/cwl/salad#null",

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110 "http://www.w3.org/2001/XMLSchema#boolean",

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111 "http://www.w3.org/2001/XMLSchema#int",

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112 "http://www.w3.org/2001/XMLSchema#long",

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113 "http://www.w3.org/2001/XMLSchema#float",

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114 "http://www.w3.org/2001/XMLSchema#double",

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115 "http://www.w3.org/2001/XMLSchema#string"

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116 ]

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117 },

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118 {

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119 "type": "enum",

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120 "docAfter": "https://w3id.org/cwl/salad#PrimitiveType",

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121 "doc": "The **Any** type validates for any non-null value.\n",

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122 "name": "https://w3id.org/cwl/salad#Any",

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123 "symbols": [

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124 "https://w3id.org/cwl/salad#Any"

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125 ]

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126 },

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127 {

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128 "type": "record",

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129 "fields": [

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130 {

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131 "type": "string",

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132 "doc": "The name of the field\n",

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133 "name": "https://w3id.org/cwl/salad#RecordField/name",

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134 "jsonldPredicate": "@id"

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135 },

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136 {

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137 "type": [

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138 "PrimitiveType",

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139 "RecordSchema",

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140 "EnumSchema",

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141 "ArraySchema",

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142 "string",

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143 {

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144 "items": [

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145 "PrimitiveType",

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146 "RecordSchema",

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147 "EnumSchema",

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148 "ArraySchema",

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149 "string"

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150 ],

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151 "type": "array"

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152 }

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153 ],

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154 "doc": "The field type\n",

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155 "name": "https://w3id.org/cwl/salad#RecordField/type",

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156 "jsonldPredicate": {

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157 "_id": "https://w3id.org/cwl/salad#type",

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158 "_type": "@vocab",

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159 "typeDSL": true,

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160 "refScope": 2

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161 }

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162 }

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163 ],

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164 "doc": "A field of a record.",

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165 "name": "https://w3id.org/cwl/salad#RecordField",

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166 "extends": "https://w3id.org/cwl/salad#Documented"

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167 },

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168 {

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169 "type": "record",

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170 "fields": [

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171 {

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172 "name": "https://w3id.org/cwl/salad#RecordSchema/fields",

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173 "doc": "Defines the fields of the record.",

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174 "type": [

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175 "null",

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176 {

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177 "items": "RecordField",

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178 "type": "array"

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179 }

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180 ],

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181 "jsonldPredicate": {

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182 "_id": "https://w3id.org/cwl/salad#fields",

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183 "mapSubject": "name",

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184 "mapPredicate": "type"

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185 }

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186 },

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187 {

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188 "name": "https://w3id.org/cwl/salad#RecordSchema/type",

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189 "doc": "Must be `record`",

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190 "type": {

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191 "type": "enum",

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192 "symbols": [

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193 "https://w3id.org/cwl/salad#record"

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194 ]

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195 },

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196 "jsonldPredicate": {

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197 "_id": "https://w3id.org/cwl/salad#type",

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198 "_type": "@vocab",

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199 "typeDSL": true,

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200 "refScope": 2

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201 }

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202 }

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203 ],

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204 "name": "https://w3id.org/cwl/salad#RecordSchema"

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205 },

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206 {

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207 "type": "record",

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208 "fields": [

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209 {

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210 "name": "https://w3id.org/cwl/salad#EnumSchema/symbols",

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211 "doc": "Defines the set of valid symbols.",

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212 "type": {

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213 "items": "string",

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214 "type": "array"

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215 },

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216 "jsonldPredicate": {

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217 "_id": "https://w3id.org/cwl/salad#symbols",

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218 "_type": "@id",

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219 "identity": true

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220 }

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221 },

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222 {

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223 "name": "https://w3id.org/cwl/salad#EnumSchema/type",

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224 "doc": "Must be `enum`",

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225 "type": {

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226 "type": "enum",

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227 "symbols": [

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228 "https://w3id.org/cwl/salad#enum"

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229 ]

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230 },

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231 "jsonldPredicate": {

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232 "_id": "https://w3id.org/cwl/salad#type",

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233 "_type": "@vocab",

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234 "typeDSL": true,

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235 "refScope": 2

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236 }

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237 }

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238 ],

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239 "doc": "Define an enumerated type.\n",

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240 "name": "https://w3id.org/cwl/salad#EnumSchema"

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241 },

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242 {

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243 "type": "record",

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244 "fields": [

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245 {

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246 "name": "https://w3id.org/cwl/salad#ArraySchema/items",

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247 "doc": "Defines the type of the array elements.",

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248 "type": [

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249 "PrimitiveType",

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250 "RecordSchema",

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251 "EnumSchema",

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252 "ArraySchema",

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253 "string",

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254 {

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255 "items": [

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256 "PrimitiveType",

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257 "RecordSchema",

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258 "EnumSchema",

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259 "ArraySchema",

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260 "string"

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261 ],

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262 "type": "array"

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263 }

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264 ],

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265 "jsonldPredicate": {

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266 "_id": "https://w3id.org/cwl/salad#items",

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267 "_type": "@vocab",

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268 "refScope": 2

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269 }

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270 },

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271 {

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272 "name": "https://w3id.org/cwl/salad#ArraySchema/type",

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273 "doc": "Must be `array`",

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274 "type": {

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275 "type": "enum",

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276 "symbols": [

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277 "https://w3id.org/cwl/salad#array"

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278 ]

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279 },

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280 "jsonldPredicate": {

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281 "_id": "https://w3id.org/cwl/salad#type",

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282 "_type": "@vocab",

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283 "typeDSL": true,

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284 "refScope": 2

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285 }

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286 }

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287 ],

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288 "name": "https://w3id.org/cwl/salad#ArraySchema"

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289 },

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290 {

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291 "type": "record",

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292 "fields": [

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293 {

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294 "type": [

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295 "null",

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296 "string"

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297 ],

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298 "doc": "The predicate URI that this field corresponds to.\nCorresponds to JSON-LD `@id` directive.\n",

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299 "name": "https://w3id.org/cwl/salad#JsonldPredicate/_id",

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300 "jsonldPredicate": {

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301 "_id": "https://w3id.org/cwl/salad#_id",

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302 "_type": "@id",

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303 "identity": true

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304 }

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305 },

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306 {

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307 "type": [

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308 "null",

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309 "string"

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310 ],

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311 "doc": "The context type hint, corresponds to JSON-LD `@type` directive.\n\n* If the value of this field is `@id` and `identity` is false or\nunspecified, the parent field must be resolved using the link\nresolution rules. If `identity` is true, the parent field must be\nresolved using the identifier expansion rules.\n\n* If the value of this field is `@vocab`, the parent field must be\n resolved using the vocabulary resolution rules.\n",

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312 "name": "https://w3id.org/cwl/salad#JsonldPredicate/_type"

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313 },

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314 {

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315 "type": [

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316 "null",

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317 "string"

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318 ],

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319 "doc": "Structure hint, corresponds to JSON-LD `@container` directive.\n",

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320 "name": "https://w3id.org/cwl/salad#JsonldPredicate/_container"

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321 },

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322 {

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323 "type": [

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324 "null",

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325 "boolean"

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326 ],

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327 "doc": "If true and `_type` is `@id` this indicates that the parent field must\nbe resolved according to identity resolution rules instead of link\nresolution rules. In addition, the field value is considered an\nassertion that the linked value exists; absence of an object in the loaded document\nwith the URI is not an error.\n",

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328 "name": "https://w3id.org/cwl/salad#JsonldPredicate/identity"

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329 },

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330 {

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331 "type": [

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332 "null",

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333 "boolean"

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334 ],

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335 "doc": "If true, this indicates that link validation traversal must stop at\nthis field. This field (it is is a URI) or any fields under it (if it\nis an object or array) are not subject to link checking.\n",

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336 "name": "https://w3id.org/cwl/salad#JsonldPredicate/noLinkCheck"

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337 },

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338 {

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339 "type": [

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340 "null",

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341 "string"

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342 ],

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343 "doc": "If the value of the field is a JSON object, it must be transformed\ninto an array of JSON objects, where each key-value pair from the\nsource JSON object is a list item, the list items must be JSON objects,\nand the key is assigned to the field specified by `mapSubject`.\n",

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344 "name": "https://w3id.org/cwl/salad#JsonldPredicate/mapSubject"

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345 },

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346 {

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347 "type": [

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348 "null",

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349 "string"

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350 ],

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351 "doc": "Only applies if `mapSubject` is also provided. If the value of the\nfield is a JSON object, it is transformed as described in `mapSubject`,\nwith the addition that when the value of a map item is not an object,\nthe item is transformed to a JSON object with the key assigned to the\nfield specified by `mapSubject` and the value assigned to the field\nspecified by `mapPredicate`.\n",

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352 "name": "https://w3id.org/cwl/salad#JsonldPredicate/mapPredicate"

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353 },

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354 {

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355 "type": [

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356 "null",

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357 "int"

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358 ],

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359 "doc": "If the field contains a relative reference, it must be resolved by\nsearching for valid document references in each successive parent scope\nin the document fragment. For example, a reference of `foo` in the\ncontext `#foo/bar/baz` will first check for the existence of\n`#foo/bar/baz/foo`, followed by `#foo/bar/foo`, then `#foo/foo` and\nthen finally `#foo`. The first valid URI in the search order shall be\nused as the fully resolved value of the identifier. The value of the\nrefScope field is the specified number of levels from the containing\nidentifer scope before starting the search, so if `refScope: 2` then\n\"baz\" and \"bar\" must be stripped to get the base `#foo` and search\n`#foo/foo` and the `#foo`. The last scope searched must be the top\nlevel scope before determining if the identifier cannot be resolved.\n",

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360 "name": "https://w3id.org/cwl/salad#JsonldPredicate/refScope"

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361 },

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362 {

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363 "type": [

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364 "null",

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365 "boolean"

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366 ],

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367 "doc": "Field must be expanded based on the the Schema Salad type DSL.\n",

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368 "name": "https://w3id.org/cwl/salad#JsonldPredicate/typeDSL"

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369 },

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370 {

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371 "type": [

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372 "null",

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373 "boolean"

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374 ],

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375 "doc": "Field must be expanded based on the the Schema Salad secondary file DSL.\n",

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376 "name": "https://w3id.org/cwl/salad#JsonldPredicate/secondaryFilesDSL"

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377 },

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378 {

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379 "type": [

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380 "null",

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381 "string"

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382 ],

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383 "doc": "Append the subscope to the current scope when performing\nidentifier resolution to objects under this field.\n",

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384 "name": "https://w3id.org/cwl/salad#JsonldPredicate/subscope"

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385 }

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386 ],

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387 "doc": "Attached to a record field to define how the parent record field is handled for\nURI resolution and JSON-LD context generation.\n",

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388 "name": "https://w3id.org/cwl/salad#JsonldPredicate"

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389 },

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390 {

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391 "type": "record",

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392 "fields": [

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393 {

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394 "type": "string",

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395 "doc": "The data type to be replaced",

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396 "name": "https://w3id.org/cwl/salad#SpecializeDef/specializeFrom",

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397 "jsonldPredicate": {

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398 "_id": "https://w3id.org/cwl/salad#specializeFrom",

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399 "_type": "@id",

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400 "refScope": 1

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401 }

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402 },

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403 {

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404 "type": "string",

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405 "doc": "The new data type to replace with",

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406 "name": "https://w3id.org/cwl/salad#SpecializeDef/specializeTo",

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407 "jsonldPredicate": {

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408 "_id": "https://w3id.org/cwl/salad#specializeTo",

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409 "_type": "@id",

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410 "refScope": 1

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411 }

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412 }

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413 ],

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414 "name": "https://w3id.org/cwl/salad#SpecializeDef"

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415 },

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416 {

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parents:

diff changeset

417 "type": "record",

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parents:

diff changeset

418 "abstract": true,

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parents:

diff changeset

419 "name": "https://w3id.org/cwl/salad#NamedType",

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parents:

diff changeset

420 "fields": [

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parents:

diff changeset

421 {

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parents:

diff changeset

422 "type": "string",

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parents:

diff changeset

423 "doc": "The identifier for this type",

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parents:

diff changeset

424 "name": "https://w3id.org/cwl/salad#NamedType/name",

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parents:

diff changeset

425 "jsonldPredicate": "@id"

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parents:

diff changeset

426 },

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parents:

diff changeset

427 {

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

428 "type": [

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

429 "null",

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parents:

diff changeset

430 "boolean"

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parents:

diff changeset

431 ],

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parents:

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432 "default": true,

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parents:

diff changeset

433 "name": "https://w3id.org/cwl/salad#NamedType/inVocab",

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parents:

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434 "doc": "If \"true\" (the default), include the short name of this type\nin the vocabulary. The vocabulary are all the symbols (field\nnames and other identifiers, such as classes and enum values)\nwhich can be used in the document without a namespace prefix.\nThese are the keys of the JSON-LD context. If false, do not\ninclude the short name in the vocabulary.\n\nThis is useful for specifying schema extensions that will be\nincluded in validation without introducing ambiguity by\nintroducing non-standard terms into the vocabulary.\n"

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parents:

diff changeset

435 }

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parents:

diff changeset

436 ],

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parents:

diff changeset

437 "docParent": "https://w3id.org/cwl/salad#Schema"

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parents:

diff changeset

438 },

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parents:

diff changeset

439 {

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parents:

diff changeset

440 "fields": [

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parents:

diff changeset

441 {

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

442 "type": [

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

443 "null",

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parents:

diff changeset

444 "string"

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parents:

diff changeset

445 ],

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parents:

diff changeset

446 "doc": "Hint to indicate that during documentation generation, documentation\nfor this type should appear in a subsection under `docParent`.\n",

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parents:

diff changeset

447 "name": "https://w3id.org/cwl/salad#DocType/docParent",

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parents:

diff changeset

448 "jsonldPredicate": {

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parents:

diff changeset

449 "_id": "https://w3id.org/cwl/salad#docParent",

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parents:

diff changeset

450 "_type": "@id"

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parents:

diff changeset

451 }

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parents:

diff changeset

452 },

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parents:

diff changeset

453 {

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parents:

diff changeset

454 "type": [

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

455 "null",

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parents:

diff changeset

456 "string",

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parents:

diff changeset

457 {

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parents:

diff changeset

458 "items": "string",

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parents:

diff changeset

459 "type": "array"

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parents:

diff changeset

460 }

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parents:

diff changeset

461 ],

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parents:

diff changeset

462 "doc": "Hint to indicate that during documentation generation, documentation\nfor `docChild` should appear in a subsection under this type.\n",

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parents:

diff changeset

463 "name": "https://w3id.org/cwl/salad#DocType/docChild",

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parents:

diff changeset

464 "jsonldPredicate": {

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parents:

diff changeset

465 "_id": "https://w3id.org/cwl/salad#docChild",

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parents:

diff changeset

466 "_type": "@id"

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parents:

diff changeset

467 }

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parents:

diff changeset

468 },

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parents:

diff changeset

469 {

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

470 "type": [

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

471 "null",

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parents:

diff changeset

472 "string"

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parents:

diff changeset

473 ],

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parents:

diff changeset

474 "doc": "Hint to indicate that during documentation generation, documentation\nfor this type should appear after the `docAfter` section at the same\nlevel.\n",

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parents:

diff changeset

475 "name": "https://w3id.org/cwl/salad#DocType/docAfter",

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parents:

diff changeset

476 "jsonldPredicate": {

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parents:

diff changeset

477 "_id": "https://w3id.org/cwl/salad#docAfter",

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parents:

diff changeset

478 "_type": "@id"

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parents:

diff changeset

479 }

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parents:

diff changeset

480 }

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parents:

diff changeset

481 ],

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parents:

diff changeset

482 "docParent": "https://w3id.org/cwl/salad#Schema",

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parents:

diff changeset

483 "name": "https://w3id.org/cwl/salad#DocType",

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parents:

diff changeset

484 "abstract": true,

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parents:

diff changeset

485 "type": "record",

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parents:

diff changeset

486 "extends": "https://w3id.org/cwl/salad#Documented"

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parents:

diff changeset

487 },

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

488 {

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

489 "fields": [

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parents:

diff changeset

490 {

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

491 "type": [

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

492 "null",

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

493 "string",

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parents:

diff changeset

494 "JsonldPredicate"

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

495 ],

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

496 "doc": "Annotate this type with linked data context.\n",

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parents:

diff changeset

497 "name": "https://w3id.org/cwl/salad#SchemaDefinedType/jsonldPredicate",

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parents:

diff changeset

498 "jsonldPredicate": "sld:jsonldPredicate"

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parents:

diff changeset

499 },

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

500 {

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

501 "type": [

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

502 "null",

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

503 "boolean"

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parents:

diff changeset

504 ],

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

505 "doc": "If true, indicates that the type is a valid at the document root. At\nleast one type in a schema must be tagged with `documentRoot: true`.\n",

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

506 "name": "https://w3id.org/cwl/salad#SchemaDefinedType/documentRoot"

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parents:

diff changeset

507 }

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

508 ],

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parents:

diff changeset

509 "name": "https://w3id.org/cwl/salad#SchemaDefinedType",

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parents:

diff changeset

510 "abstract": true,

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parents:

diff changeset

511 "doc": "Abstract base for schema-defined types.\n",

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

512 "type": "record",

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parents:

diff changeset

513 "extends": "https://w3id.org/cwl/salad#DocType"

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parents:

diff changeset

514 },

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parents:

diff changeset

515 {

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

516 "type": "record",

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parents:

diff changeset

517 "fields": [

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

518 {

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

519 "type": [

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

520 "null",

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

521 "string",

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

522 "JsonldPredicate"

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

523 ],

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

524 "doc": "Annotate this type with linked data context.\n",

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

525 "name": "https://w3id.org/cwl/salad#SaladRecordField/jsonldPredicate",

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parents:

diff changeset

526 "jsonldPredicate": "sld:jsonldPredicate"

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parents:

diff changeset

527 },

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

528 {

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

529 "type": [

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

530 "null",

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

531 "Any"

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parents:

diff changeset

532 ],

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parents:

diff changeset

533 "doc": "The default value to use for this field if the field is missing or \"null\".\n",

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

534 "name": "https://w3id.org/cwl/salad#SaladRecordField/default",

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parents:

diff changeset

535 "jsonldPredicate": {

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

536 "_id": "https://w3id.org/cwl/salad#default",

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shellac

parents:

diff changeset

537 "noLinkCheck": true

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

538 }

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

539 }

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

shellac

parents:

diff changeset

540 ],

26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

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parents:

diff changeset

541 "doc": "A field of a record.",

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parents:

diff changeset

542 "name": "https://w3id.org/cwl/salad#SaladRecordField",

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parents:

diff changeset

543 "extends": "https://w3id.org/cwl/salad#RecordField"

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parents:

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544 },

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545 {

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546 "specialize": [

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547 {

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548 "specializeFrom": "https://w3id.org/cwl/salad#RecordField",

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549 "specializeTo": "https://w3id.org/cwl/salad#SaladRecordField"

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550 }

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551 ],

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552 "docParent": "https://w3id.org/cwl/salad#Schema",

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553 "documentRoot": true,

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554 "name": "https://w3id.org/cwl/salad#SaladRecordSchema",

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555 "fields": [

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556 {

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557 "type": [

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558 "null",

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559 "boolean"

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560 ],

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561 "doc": "If true, this record is abstract and may be used as a base for other\nrecords, but is not valid on its own.\n",

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562 "name": "https://w3id.org/cwl/salad#SaladRecordSchema/abstract"

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563 },

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564 {

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565 "type": [

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566 "null",

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567 "string",

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568 {

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569 "items": "string",

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570 "type": "array"

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571 }

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572 ],

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573 "doc": "Indicates that this record inherits fields from one or more base records.\n",

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574 "name": "https://w3id.org/cwl/salad#SaladRecordSchema/extends",

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575 "jsonldPredicate": {

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576 "_id": "https://w3id.org/cwl/salad#extends",

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577 "_type": "@id",

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578 "refScope": 1

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579 }

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580 },

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581 {

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582 "type": [

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583 "null",

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584 {

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585 "items": "SpecializeDef",

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586 "type": "array"

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587 }

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588 ],

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589 "doc": "Only applies if `extends` is declared. Apply type specialization using the\nbase record as a template. For each field inherited from the base\nrecord, replace any instance of the type `specializeFrom` with\n`specializeTo`.\n",

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590 "name": "https://w3id.org/cwl/salad#SaladRecordSchema/specialize",

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591 "jsonldPredicate": {

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