Mercurial > repos > shellac > guppy_basecaller

annotate env/bin/pyami_sendmail @ 4:79f47841a781 draft

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"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author shellac
date Thu, 14 May 2020 16:47:39 -0400
parents 26e78fe6e8c4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 #!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3
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2 # Copyright (c) 2010 Chris Moyer http://coredumped.org/
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3 #
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4 # Permission is hereby granted, free of charge, to any person obtaining a
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5 # copy of this software and associated documentation files (the
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6 # "Software"), to deal in the Software without restriction, including
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7 # without limitation the rights to use, copy, modify, merge, publish, dis-
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8 # tribute, sublicense, and/or sell copies of the Software, and to permit
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9 # persons to whom the Software is furnished to do so, subject to the fol-
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10 # lowing conditions:
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11 #
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12 # The above copyright notice and this permission notice shall be included
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13 # in all copies or substantial portions of the Software.
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14 #
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15 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
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16 # OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
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17 # ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
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18 # SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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19 # WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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20 # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
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21
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22 #
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23 # Send Mail from a PYAMI instance, or anything that has a boto.cfg
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24 # properly set up
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25 #
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26 VERSION="0.1"
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27 usage = """%prog [options]
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28 Sends whatever is on stdin to the recipient specified by your boto.cfg
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29 or whoevery you specify in the options here.
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30 """
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31
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32 if __name__ == "__main__":
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33 from boto.utils import notify
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34 import sys
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35 from optparse import OptionParser
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36 parser = OptionParser(version=VERSION, usage=usage)
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37 parser.add_option("-t", "--to", help="Optional to address to send to (default from your boto.cfg)", action="store", default=None, dest="to")
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38 parser.add_option("-s", "--subject", help="Optional Subject to send this report as", action="store", default="Report", dest="subject")
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39 parser.add_option("-f", "--file", help="Optionally, read from a file instead of STDIN", action="store", default=None, dest="file")
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40 parser.add_option("--html", help="HTML Format the email", action="store_true", default=False, dest="html")
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41 parser.add_option("--no-instance-id", help="If set, don't append the instance id", action="store_false", default=True, dest="append_instance_id")
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42
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43 (options, args) = parser.parse_args()
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44 if options.file:
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45 body = open(options.file, 'r').read()
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46 else:
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47 body = sys.stdin.read()
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48
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49 if options.html:
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50 notify(options.subject, html_body=body, to_string=options.to, append_instance_id=options.append_instance_id)
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51 else:
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52 notify(options.subject, body=body, to_string=options.to, append_instance_id=options.append_instance_id)