Mercurial > repos > shellac > guppy_basecaller

annotate env/lib/python3.7/site-packages/bioblend/config.py @ 4:79f47841a781 draft

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"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author shellac
date Thu, 14 May 2020 16:47:39 -0400
parents 26e78fe6e8c4
children
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1 import os
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2
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3 from six.moves import configparser
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4
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5 BioBlendConfigPath = '/etc/bioblend.cfg'
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6 BioBlendConfigLocations = [BioBlendConfigPath]
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7 UserConfigPath = os.path.join(os.path.expanduser('~'), '.bioblend')
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8 BioBlendConfigLocations.append(UserConfigPath)
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9
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11 class Config(configparser.SafeConfigParser):
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12 """
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13 BioBlend allows library-wide configuration to be set in external files.
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14 These configuration files can be used to specify access keys, for example.
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15 By default we use two locations for the BioBlend configurations:
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16
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17 * System wide: ``/etc/bioblend.cfg``
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18 * Individual user: ``~/.bioblend`` (which works on both Windows and Unix)
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19 """
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20 def __init__(self, path=None, fp=None, do_load=True):
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21 configparser.SafeConfigParser.__init__(self, {'working_dir': '/mnt/pyami',
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22 'debug': '0'})
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23 if do_load:
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24 if path:
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25 self.load_from_path(path)
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26 elif fp:
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27 self.readfp(fp)
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28 else:
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29 self.read(BioBlendConfigLocations)
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30
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31 def get_value(self, section, name, default=None):
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32 return self.get(section, name, default)
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33
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34 def get(self, section, name, default=None):
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35 try:
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36 val = configparser.SafeConfigParser.get(self, section, name)
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37 except Exception:
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38 val = default
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39 return val
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40
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41 def getint(self, section, name, default=0):
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42 try:
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43 val = configparser.SafeConfigParser.getint(self, section, name)
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44 except Exception:
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45 val = int(default)
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46 return val
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47
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48 def getfloat(self, section, name, default=0.0):
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49 try:
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50 val = configparser.SafeConfigParser.getfloat(self, section, name)
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51 except Exception:
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52 val = float(default)
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53 return val
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54
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55 def getbool(self, section, name, default=False):
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56 if self.has_option(section, name):
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57 val = self.get(section, name)
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58 if val.lower() == 'true':
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59 val = True
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60 else:
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61 val = False
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62 else:
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63 val = default
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64 return val