Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/bioblend/config.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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import os from six.moves import configparser BioBlendConfigPath = '/etc/bioblend.cfg' BioBlendConfigLocations = [BioBlendConfigPath] UserConfigPath = os.path.join(os.path.expanduser('~'), '.bioblend') BioBlendConfigLocations.append(UserConfigPath) class Config(configparser.SafeConfigParser): """ BioBlend allows library-wide configuration to be set in external files. These configuration files can be used to specify access keys, for example. By default we use two locations for the BioBlend configurations: * System wide: ``/etc/bioblend.cfg`` * Individual user: ``~/.bioblend`` (which works on both Windows and Unix) """ def __init__(self, path=None, fp=None, do_load=True): configparser.SafeConfigParser.__init__(self, {'working_dir': '/mnt/pyami', 'debug': '0'}) if do_load: if path: self.load_from_path(path) elif fp: self.readfp(fp) else: self.read(BioBlendConfigLocations) def get_value(self, section, name, default=None): return self.get(section, name, default) def get(self, section, name, default=None): try: val = configparser.SafeConfigParser.get(self, section, name) except Exception: val = default return val def getint(self, section, name, default=0): try: val = configparser.SafeConfigParser.getint(self, section, name) except Exception: val = int(default) return val def getfloat(self, section, name, default=0.0): try: val = configparser.SafeConfigParser.getfloat(self, section, name) except Exception: val = float(default) return val def getbool(self, section, name, default=False): if self.has_option(section, name): val = self.get(section, name) if val.lower() == 'true': val = True else: val = False else: val = default return val