Mercurial > repos > shellac > guppy_basecaller

comparison env/lib/python3.7/site-packages/bioblend/config.py @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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-1:000000000000 0:26e78fe6e8c4
1 import os
2
3 from six.moves import configparser
4
5 BioBlendConfigPath = '/etc/bioblend.cfg'
6 BioBlendConfigLocations = [BioBlendConfigPath]
7 UserConfigPath = os.path.join(os.path.expanduser('~'), '.bioblend')
8 BioBlendConfigLocations.append(UserConfigPath)
9
10
11 class Config(configparser.SafeConfigParser):
12 """
13 BioBlend allows library-wide configuration to be set in external files.
14 These configuration files can be used to specify access keys, for example.
15 By default we use two locations for the BioBlend configurations:
16
17 * System wide: ``/etc/bioblend.cfg``
18 * Individual user: ``~/.bioblend`` (which works on both Windows and Unix)
19 """
20 def __init__(self, path=None, fp=None, do_load=True):
21 configparser.SafeConfigParser.__init__(self, {'working_dir': '/mnt/pyami',
22 'debug': '0'})
23 if do_load:
24 if path:
25 self.load_from_path(path)
26 elif fp:
27 self.readfp(fp)
28 else:
29 self.read(BioBlendConfigLocations)
30
31 def get_value(self, section, name, default=None):
32 return self.get(section, name, default)
33
34 def get(self, section, name, default=None):
35 try:
36 val = configparser.SafeConfigParser.get(self, section, name)
37 except Exception:
38 val = default
39 return val
40
41 def getint(self, section, name, default=0):
42 try:
43 val = configparser.SafeConfigParser.getint(self, section, name)
44 except Exception:
45 val = int(default)
46 return val
47
48 def getfloat(self, section, name, default=0.0):
49 try:
50 val = configparser.SafeConfigParser.getfloat(self, section, name)
51 except Exception:
52 val = float(default)
53 return val
54
55 def getbool(self, section, name, default=False):
56 if self.has_option(section, name):
57 val = self.get(section, name)
58 if val.lower() == 'true':
59 val = True
60 else:
61 val = False
62 else:
63 val = default
64 return val