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comparison env/lib/python3.7/site-packages/cwltool/tests/secondary-files.cwl @ 2:6af9afd405e9 draft

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"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author shellac
date Thu, 14 May 2020 14:56:58 -0400
parents 26e78fe6e8c4
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1:75ca89e9b81c 2:6af9afd405e9
1 #!/usr/bin/env cwl-runner
2
3 cwlVersion: v1.1.0-dev1
4
5 requirements:
6 - class: InlineJavascriptRequirement
7 - class: ShellCommandRequirement
8
9 class: CommandLineTool
10
11 inputs:
12 fasta_path:
13 type: File
14 secondaryFiles:
15 - pattern: ^.fastq
16 required: true
17 - pattern: .crai
18 required: false
19 - .bai?
20 - pattern: "${ return null }"
21
22 outputs:
23 bai_list:
24 type: File
25 outputBinding:
26 glob: lsout
27 secondaryFiles:
28 - .bai?
29 - pattern: "${ return null }"
30 - pattern: .crai
31 required: false
32 - pattern: .idx
33
34 baseCommand: ["ls"]
35
36 stdout: lsout