Mercurial > repos > shellac > guppy_basecaller

comparison env/lib/python3.7/site-packages/cwltool/tests/wf/sec-wf-out.cwl @ 2:6af9afd405e9 draft

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"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author shellac
date Thu, 14 May 2020 14:56:58 -0400
parents 26e78fe6e8c4
children
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1:75ca89e9b81c 2:6af9afd405e9
1 #!/usr/bin/env cwl-runner
2 class: Workflow
3 cwlVersion: v1.0
4 inputs: []
5 outputs:
6 file1:
7 type: File
8 outputSource: step1/file1
9
10
11 steps:
12 step1:
13 in: []
14 out:
15 - file1
16 - file1csv
17 run:
18 class: CommandLineTool
19 requirements:
20 - class: ShellCommandRequirement
21 arguments:
22 - shellQuote: false
23 valueFrom: >
24 echo "abc" > f.txt;
25 echo "3" > f.txt.size;
26 echo "a" > f.txt.firstletter;
27 echo "a,b,c" > f.csv;
28 echo "1,2,3" > f.csv.columns;
29 echo "ignored" > f.txt.ignoreme;
30 inputs: []
31 outputs:
32 file1:
33 type: File
34 outputBinding:
35 glob: "f.txt"
36 secondaryFiles:
37 - ".size"
38 - ".firstletter"
39 - "^.csv"
40 file1csv:
41 type: File
42 outputBinding:
43 glob: "f.csv"
44 secondaryFiles:
45 - ".columns"