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comparison env/lib/python3.7/site-packages/gxformat2-0.11.1.dist-info/METADATA @ 5:9b1c78e6ba9c draft default tip

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"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author shellac
date Mon, 01 Jun 2020 08:59:25 -0400
parents 79f47841a781
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4:79f47841a781 5:9b1c78e6ba9c
1 Metadata-Version: 2.1
2 Name: gxformat2
3 Version: 0.11.1
4 Summary: Galaxy Workflow Format 2 Descriptions
5 Home-page: https://github.com/galaxyproject/gxformat2
6 Author: Galaxy Project and Community
7 Author-email: jmchilton@gmail.com
8 License: AFL
9 Keywords: galaxy
10 Platform: UNKNOWN
11 Classifier: Development Status :: 5 - Production/Stable
12 Classifier: Intended Audience :: Developers
13 Classifier: Environment :: Console
14 Classifier: License :: OSI Approved :: Academic Free License (AFL)
15 Classifier: Operating System :: POSIX
16 Classifier: Topic :: Software Development
17 Classifier: Topic :: Software Development :: Code Generators
18 Classifier: Topic :: Software Development :: Testing
19 Classifier: Natural Language :: English
20 Classifier: Programming Language :: Python :: 2
21 Classifier: Programming Language :: Python :: 2.7
22 Classifier: Programming Language :: Python :: 3
23 Requires-Dist: six (>=1.9.0)
24 Requires-Dist: bioblend
25 Requires-Dist: pyyaml
26
27
28 .. image:: https://readthedocs.org/projects/pip/badge/?version=latest
29 :target: https://gxformat2.readthedocs.org
30
31 .. image:: https://badge.fury.io/py/gxformat2.svg
32 :target: https://pypi.python.org/pypi/gxformat2/
33
34 .. image:: https://travis-ci.org/jmchilton/gxformat2.png?branch=master
35 :target: https://travis-ci.org/jmchilton/gxformat2
36
37 .. image:: https://coveralls.io/repos/jmchilton/gxformat2/badge.svg?branch=master
38 :target: https://coveralls.io/r/jmchilton/gxformat2?branch=master
39
40
41 This package defines a high-level Galaxy_ workflow description termed "Format
42 2". At this point, these workflows are defined entirely client side and
43 transcoded into traditional (or Format 1?) Galaxy workflows.
44
45 The traditional Galaxy workflow description is not meant to be concise and is
46 neither readily human readable or human writable. Format 2 addresses all three
47 of these limitations.
48
49 Format 2 workflow is a highly experimental format and will change rapidly in
50 potentially backward incompatible ways until the code is merged into the
51 Galaxy server and enabled by default.
52
53 * Free software: Academic Free License version 3.0
54 * Documentation: https://galaxy-lib.readthedocs.org.
55 * Code: https://github.com/galaxyproject/galaxy-lib
56
57
58 .. _Galaxy: http://galaxyproject.org/
59 .. _GitHub: https://github.com/
60 .. _Travis CI: http://travis-ci.org/
61
62
63
64
65 History
66 -------
67
68 .. to_doc
69
70 ---------------------
71 0.11.1 (2020-02-25)
72 ---------------------
73
74 * Bug fix for gxwf-lint invocation from setup.py installed script.
75
76 ---------------------
77 0.11.0 (2020-02-25)
78 ---------------------
79
80 * Validate Galaxy Markdown in workflow reports as part of linting.
81 * Improved null handling in native ga workflow linting.
82 * Enhancements to workflow linting from Python. Lint for lack of documentation,
83 tools using the test toolshed, and implement special linting for training
84 material workflows to ensure a tag matches the workflow topic.
85 * Add gxwf-viz script that produces a cytoscape visualization of a workflow.
86
87 ---------------------
88 0.10.1 (2019-12-07)
89 ---------------------
90
91 * Bug fix to handle outputs without labels in Format 2 - they
92 don't validate per se but they are important for testing in the
93 Galaxy framework.
94
95 ---------------------
96 0.10.0 (2019-12-06)
97 ---------------------
98
99 * Implement scheam, validation, linting (for Format 2 and .ga).
100 * Handle new reports field in Galaxy 19.09 workflows.
101 * Numerous fixes for conversiion to and from native workflows.
102 * Numerous new test cases.
103 * Implement Java project for valiating and linting both kinds of workflows.
104
105 ---------------------
106 0.9.0 (2019-07-08)
107 ---------------------
108
109 * Implement default values in gxformat2.
110
111 ---------------------
112 0.8.4 (2019-06-24)
113 ---------------------
114
115 * Fix output IDs of 0.
116
117 ---------------------
118 0.8.3 (2019-05-23)
119 ---------------------
120
121 * Implement set_columns PJA.
122
123 ---------------------
124 0.8.2 (2019-03-16)
125 ---------------------
126
127 * Allow another API return option for experimental tool creation API.
128
129 ---------------------
130 0.8.1 (2019-03-11)
131 ---------------------
132
133 * Implement change datatype PJA.
134
135 ---------------------
136 0.8.0 (2018-11-01)
137 ---------------------
138
139 * Implement experimental CWL-style step defaults (see Galaxy PR #6850).
140
141 ---------------------
142 0.7.1 (2018-10-09)
143 ---------------------
144
145 * Various small fixes for changes in 0.7.1.
146
147 ---------------------
148 0.7.0 (2018-10-08)
149 ---------------------
150
151 * Add some basic test cases.
152 * Allow ID-map style listing of steps.
153 * Ordered load (in addition to existing dump functionality) or ordering of steps in ID-map style variant works.
154 * Allow CWL-style $graph defs that can define multiple workflows in a single file.
155 * Initial work on de-duplicating subworkflow definitions on import.
156 * Fix position handling while exporting workflow.
157
158 ---------------------
159 0.6.1 (2018-10-01)
160 ---------------------
161
162 * Fix export of non-data parameters and implicit workflow connections.
163
164 ---------------------
165 0.6.0 (2018-10-01)
166 ---------------------
167
168 * Various fixes, allow id map style workflow input definitions.
169
170 ---------------------
171 0.5.0 (2018-10-01)
172 ---------------------
173
174 * More fixes for PJA, add the ``doc`` keyword to format 2 workflows to match CWL workflows. Map to and from native Galaxy workflows as annotations.
175
176 ---------------------
177 0.4.0 (2018-10-01)
178 ---------------------
179
180 * Fixes for exporting PJA when exporting workflows from native .ga to format 2.
181
182 ---------------------
183 0.3.2 (2018-10-01)
184 ---------------------
185
186 * Fixes for exporting workflow outputs from native .ga to format 2, support for modern map style output definitions like CWL 1.0.
187
188 ---------------------
189 0.3.1 (2018-10-01)
190 ---------------------
191
192 * Fixes for exporting subworkflows from native .ga to format 2.
193
194 ---------------------
195 0.3.0 (2018-09-30)
196 ---------------------
197
198 * More cwl style inputs, initial work on conversion from native workflows, various small fixes and tweaks.
199
200 ---------------------
201 0.2.0 (2018-02-21)
202 ---------------------
203
204 * Bring in latest Galaxy updates - Python 3 fixes, safe YAML usage, and more PJA implemented.
205
206 ---------------------
207 0.1.1 (2016-08-15)
208 ---------------------
209
210 * Fix one Python 3 incompatibility.
211
212 ---------------------
213 0.1.0 (2016-05-02)
214 ---------------------
215
216 * Initial version - code from Galaxy's test framework with changes
217 based on planemo testing.
218
219