Mercurial > repos > shellac > guppy_basecaller

comparison env/lib/python3.7/site-packages/planemo/galaxy/distro_tools.py @ 5:9b1c78e6ba9c draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author shellac
date Mon, 01 Jun 2020 08:59:25 -0400
parents 79f47841a781
children
comparison
equal deleted inserted replaced
4:79f47841a781 5:9b1c78e6ba9c
1 # file auto generated with scripts/tool_index_to_id_map.py
2 DISTRO_TOOLS_ID_TO_PATH = {
3 "ucsc_table_direct1": "data_source/ucsc_tablebrowser.xml",
4 "MAF_To_Fasta1": "maf/maf_to_fasta.xml",
5 "ratmine": "data_source/ratmine.xml",
6 "mousemine": "data_source/mousemine.xml",
7 "__SORTLIST__": "${model_tools_path}/sort_collection_list.xml",
8 "__UNZIP_COLLECTION__": "${model_tools_path}/unzip_collection.xml",
9 "cbi_rice_mart": "data_source/cbi_rice_mart.xml",
10 "ucsc_table_direct_archaea1": "data_source/ucsc_tablebrowser_archaea.xml",
11 "wig_to_bigWig": "filters/wig_to_bigwig.xml",
12 "ebi_sra_main": "data_source/ebi_sra.xml",
13 "metabolicmine": "data_source/metabolicmine.xml",
14 "Extract_features1": "filters/gff/extract_GFF_Features.xml",
15 "upload1": "data_source/upload.xml",
16 "wc_gnu": "filters/wc_gnu.xml",
17 "join1": "filters/joiner.xml",
18 "random_lines1": "filters/randomlines.xml",
19 "modENCODEfly": "data_source/fly_modencode.xml",
20 "gff_filter_by_attribute": "filters/gff/gff_filter_by_attribute.xml",
21 "gtf2bedgraph": "filters/gtf2bedgraph.xml",
22 "ChangeCase": "filters/changeCase.xml",
23 "__FLATTEN__": "${model_tools_path}/flatten_collection.xml",
24 "wiggle2simple1": "filters/wiggle_to_simple.xml",
25 "GeneBed_Maf_Fasta2": "maf/genebed_maf_to_fasta.xml",
26 "trimmer": "filters/trimmer.xml",
27 "createInterval": "filters/CreateInterval.xml",
28 "gff_filter_by_feature_count": "filters/gff/gff_filter_by_feature_count.xml",
29 "Interval2Maf1": "maf/interval2maf.xml",
30 "genomespace_exporter": "genomespace/genomespace_exporter.xml",
31 "Show tail1": "filters/tailWrapper.xml",
32 "barchart_gnuplot": "plotting/bar_chart.xml",
33 "microbial_import1": "data_source/microbial_import.xml",
34 "axt_to_concat_fasta": "filters/axt_to_concat_fasta.xml",
35 "__FILTER_FROM_FILE__": "${model_tools_path}/filter_from_file.xml",
36 "Interval2Maf_pairwise1": "maf/interval2maf_pairwise.xml",
37 "Show beginning1": "filters/headWrapper.xml",
38 "axt_to_lav_1": "filters/axt_to_lav.xml",
39 "modmine": "data_source/modmine.xml",
40 "__EXPORT_HISTORY__": "${model_tools_path}/imp_exp/exp_history_to_archive.xml",
41 "MAF_Thread_For_Species1": "maf/maf_thread_for_species.xml",
42 "vcf_to_maf_customtrack1": "maf/vcf_to_maf_customtrack.xml",
43 "MAF_To_BED1": "maf/maf_to_bed.xml",
44 "__DATA_FETCH__": "${model_tools_path}/data_fetch.xml",
45 "__IMPORT_HISTORY__": "${model_tools_path}/imp_exp/imp_history_from_archive.xml",
46 "biomart": "data_source/biomart.xml",
47 "Sff_extractor": "filters/sff_extractor.xml",
48 "secure_hash_message_digest": "filters/secure_hash_message_digest.xml",
49 "MAF_Reverse_Complement_1": "maf/maf_reverse_complement.xml",
50 "mergeCols1": "filters/mergeCols.xml",
51 "gff2bed1": "filters/gff2bed.xml",
52 "Grouping1": "stats/grouping.xml",
53 "maf_limit_size1": "maf/maf_limit_size.xml",
54 "sort1": "filters/sorter.xml",
55 "Convert characters1": "filters/convert_characters.xml",
56 "MAF_To_Interval1": "maf/maf_to_interval.xml",
57 "MAF_filter": "maf/maf_filter.xml",
58 "MAF_split_blocks_by_species1": "maf/maf_split_by_species.xml",
59 "genomespace_importer": "genomespace/genomespace_importer.xml",
60 "gene2exon1": "filters/ucsc_gene_bed_to_exon_bed.xml",
61 "Cut1": "filters/cutWrapper.xml",
62 "Count1": "filters/uniq.xml",
63 "MAF_Limit_To_Species1": "maf/maf_limit_to_species.xml",
64 "ucsc_table_direct_test1": "data_source/ucsc_tablebrowser_test.xml",
65 "wormbase": "data_source/wormbase.xml",
66 "maf_stats1": "maf/maf_stats.xml",
67 "zebrafishmine": "data_source/zebrafishmine.xml",
68 "Paste1": "filters/pasteWrapper.xml",
69 "Interval_Maf_Merged_Fasta2": "maf/interval_maf_to_merged_fasta.xml",
70 "modENCODEworm": "data_source/worm_modencode.xml",
71 "gtf_filter_by_attribute_values_list": "filters/gff/gtf_filter_by_attribute_values_list.xml",
72 "Summary_Statistics1": "stats/gsummary.xml",
73 "qual_stats_boxplot": "plotting/boxplot.xml",
74 "cat1": "filters/catWrapper.xml",
75 "maf_by_block_number1": "maf/maf_by_block_number.xml",
76 "Grep1": "filters/grep.xml",
77 "eupathdb": "data_source/eupathdb.xml",
78 "__RELABEL_FROM_FILE__": "${model_tools_path}/relabel_from_file.xml",
79 "__ZIP_COLLECTION__": "${model_tools_path}/zip_collection.xml",
80 "lav_to_bed1": "filters/lav_to_bed.xml",
81 "comp1": "filters/compare.xml",
82 "bed_to_bigBed": "filters/bed_to_bigbed.xml",
83 "liftOver1": "extract/liftOver_wrapper.xml",
84 "bed2gff1": "filters/bed2gff.xml",
85 "__MERGE_COLLECTION__": "${model_tools_path}/merge_collection.xml",
86 "gramenemart": "data_source/gramene_mart.xml",
87 "hbvar": "data_source/hbvar.xml",
88 "yeastmine": "data_source/yeastmine.xml",
89 "Filter1": "stats/filtering.xml",
90 "flymine": "data_source/flymine.xml",
91 "wormbase_test": "data_source/wormbase_test.xml",
92 "__FILTER_FAILED_DATASETS__": "${model_tools_path}/filter_failed_collection.xml",
93 "Extract genomic DNA 1": "extract/extract_genomic_dna.xml",
94 "Remove beginning1": "filters/remove_beginning.xml",
95 "flymine_test": "data_source/flymine_test.xml",
96 "axt_to_fasta": "filters/axt_to_fasta.xml",
97 "addValue": "filters/fixedValueColumn.xml",
98 "__TAG_FROM_FILE__": "${model_tools_path}/tag_collection_from_file.xml"
99 }