Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/planemo/galaxy/distro_tools.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author | shellac |
---|---|
date | Mon, 01 Jun 2020 08:59:25 -0400 (2020-06-01) |
parents | 79f47841a781 |
children |
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--- a/env/lib/python3.7/site-packages/planemo/galaxy/distro_tools.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,99 +0,0 @@ -# file auto generated with scripts/tool_index_to_id_map.py -DISTRO_TOOLS_ID_TO_PATH = { - "ucsc_table_direct1": "data_source/ucsc_tablebrowser.xml", - "MAF_To_Fasta1": "maf/maf_to_fasta.xml", - "ratmine": "data_source/ratmine.xml", - "mousemine": "data_source/mousemine.xml", - "__SORTLIST__": "${model_tools_path}/sort_collection_list.xml", - "__UNZIP_COLLECTION__": "${model_tools_path}/unzip_collection.xml", - "cbi_rice_mart": "data_source/cbi_rice_mart.xml", - "ucsc_table_direct_archaea1": "data_source/ucsc_tablebrowser_archaea.xml", - "wig_to_bigWig": "filters/wig_to_bigwig.xml", - "ebi_sra_main": "data_source/ebi_sra.xml", - "metabolicmine": "data_source/metabolicmine.xml", - "Extract_features1": "filters/gff/extract_GFF_Features.xml", - "upload1": "data_source/upload.xml", - "wc_gnu": "filters/wc_gnu.xml", - "join1": "filters/joiner.xml", - "random_lines1": "filters/randomlines.xml", - "modENCODEfly": "data_source/fly_modencode.xml", - "gff_filter_by_attribute": "filters/gff/gff_filter_by_attribute.xml", - "gtf2bedgraph": "filters/gtf2bedgraph.xml", - "ChangeCase": "filters/changeCase.xml", - "__FLATTEN__": "${model_tools_path}/flatten_collection.xml", - "wiggle2simple1": "filters/wiggle_to_simple.xml", - "GeneBed_Maf_Fasta2": "maf/genebed_maf_to_fasta.xml", - "trimmer": "filters/trimmer.xml", - "createInterval": "filters/CreateInterval.xml", - "gff_filter_by_feature_count": "filters/gff/gff_filter_by_feature_count.xml", - "Interval2Maf1": "maf/interval2maf.xml", - "genomespace_exporter": "genomespace/genomespace_exporter.xml", - "Show tail1": "filters/tailWrapper.xml", - "barchart_gnuplot": "plotting/bar_chart.xml", - "microbial_import1": "data_source/microbial_import.xml", - "axt_to_concat_fasta": "filters/axt_to_concat_fasta.xml", - "__FILTER_FROM_FILE__": "${model_tools_path}/filter_from_file.xml", - "Interval2Maf_pairwise1": "maf/interval2maf_pairwise.xml", - "Show beginning1": "filters/headWrapper.xml", - "axt_to_lav_1": "filters/axt_to_lav.xml", - "modmine": "data_source/modmine.xml", - "__EXPORT_HISTORY__": "${model_tools_path}/imp_exp/exp_history_to_archive.xml", - "MAF_Thread_For_Species1": "maf/maf_thread_for_species.xml", - "vcf_to_maf_customtrack1": "maf/vcf_to_maf_customtrack.xml", - "MAF_To_BED1": "maf/maf_to_bed.xml", - "__DATA_FETCH__": "${model_tools_path}/data_fetch.xml", - "__IMPORT_HISTORY__": "${model_tools_path}/imp_exp/imp_history_from_archive.xml", - "biomart": "data_source/biomart.xml", - "Sff_extractor": "filters/sff_extractor.xml", - "secure_hash_message_digest": "filters/secure_hash_message_digest.xml", - "MAF_Reverse_Complement_1": "maf/maf_reverse_complement.xml", - "mergeCols1": "filters/mergeCols.xml", - "gff2bed1": "filters/gff2bed.xml", - "Grouping1": "stats/grouping.xml", - "maf_limit_size1": "maf/maf_limit_size.xml", - "sort1": "filters/sorter.xml", - "Convert characters1": "filters/convert_characters.xml", - "MAF_To_Interval1": "maf/maf_to_interval.xml", - "MAF_filter": "maf/maf_filter.xml", - "MAF_split_blocks_by_species1": "maf/maf_split_by_species.xml", - "genomespace_importer": "genomespace/genomespace_importer.xml", - "gene2exon1": "filters/ucsc_gene_bed_to_exon_bed.xml", - "Cut1": "filters/cutWrapper.xml", - "Count1": "filters/uniq.xml", - "MAF_Limit_To_Species1": "maf/maf_limit_to_species.xml", - "ucsc_table_direct_test1": "data_source/ucsc_tablebrowser_test.xml", - "wormbase": "data_source/wormbase.xml", - "maf_stats1": "maf/maf_stats.xml", - "zebrafishmine": "data_source/zebrafishmine.xml", - "Paste1": "filters/pasteWrapper.xml", - "Interval_Maf_Merged_Fasta2": "maf/interval_maf_to_merged_fasta.xml", - "modENCODEworm": "data_source/worm_modencode.xml", - "gtf_filter_by_attribute_values_list": "filters/gff/gtf_filter_by_attribute_values_list.xml", - "Summary_Statistics1": "stats/gsummary.xml", - "qual_stats_boxplot": "plotting/boxplot.xml", - "cat1": "filters/catWrapper.xml", - "maf_by_block_number1": "maf/maf_by_block_number.xml", - "Grep1": "filters/grep.xml", - "eupathdb": "data_source/eupathdb.xml", - "__RELABEL_FROM_FILE__": "${model_tools_path}/relabel_from_file.xml", - "__ZIP_COLLECTION__": "${model_tools_path}/zip_collection.xml", - "lav_to_bed1": "filters/lav_to_bed.xml", - "comp1": "filters/compare.xml", - "bed_to_bigBed": "filters/bed_to_bigbed.xml", - "liftOver1": "extract/liftOver_wrapper.xml", - "bed2gff1": "filters/bed2gff.xml", - "__MERGE_COLLECTION__": "${model_tools_path}/merge_collection.xml", - "gramenemart": "data_source/gramene_mart.xml", - "hbvar": "data_source/hbvar.xml", - "yeastmine": "data_source/yeastmine.xml", - "Filter1": "stats/filtering.xml", - "flymine": "data_source/flymine.xml", - "wormbase_test": "data_source/wormbase_test.xml", - "__FILTER_FAILED_DATASETS__": "${model_tools_path}/filter_failed_collection.xml", - "Extract genomic DNA 1": "extract/extract_genomic_dna.xml", - "Remove beginning1": "filters/remove_beginning.xml", - "flymine_test": "data_source/flymine_test.xml", - "axt_to_fasta": "filters/axt_to_fasta.xml", - "addValue": "filters/fixedValueColumn.xml", - "__TAG_FROM_FILE__": "${model_tools_path}/tag_collection_from_file.xml" -}