Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/cwltool/tests/secondary-files.cwl @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/cwltool/tests/secondary-files.cwl Sat May 02 07:14:21 2020 -0400 @@ -0,0 +1,36 @@ +#!/usr/bin/env cwl-runner + +cwlVersion: v1.1.0-dev1 + +requirements: + - class: InlineJavascriptRequirement + - class: ShellCommandRequirement + +class: CommandLineTool + +inputs: + fasta_path: + type: File + secondaryFiles: + - pattern: ^.fastq + required: true + - pattern: .crai + required: false + - .bai? + - pattern: "${ return null }" + +outputs: + bai_list: + type: File + outputBinding: + glob: lsout + secondaryFiles: + - .bai? + - pattern: "${ return null }" + - pattern: .crai + required: false + - pattern: .idx + +baseCommand: ["ls"] + +stdout: lsout \ No newline at end of file