Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/lockfile/sqlitelockfile.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/lockfile/sqlitelockfile.py Sat May 02 07:14:21 2020 -0400 @@ -0,0 +1,156 @@ +from __future__ import absolute_import, division + +import time +import os + +try: + unicode +except NameError: + unicode = str + +from . import LockBase, NotLocked, NotMyLock, LockTimeout, AlreadyLocked + + +class SQLiteLockFile(LockBase): + "Demonstrate SQL-based locking." + + testdb = None + + def __init__(self, path, threaded=True, timeout=None): + """ + >>> lock = SQLiteLockFile('somefile') + >>> lock = SQLiteLockFile('somefile', threaded=False) + """ + LockBase.__init__(self, path, threaded, timeout) + self.lock_file = unicode(self.lock_file) + self.unique_name = unicode(self.unique_name) + + if SQLiteLockFile.testdb is None: + import tempfile + _fd, testdb = tempfile.mkstemp() + os.close(_fd) + os.unlink(testdb) + del _fd, tempfile + SQLiteLockFile.testdb = testdb + + import sqlite3 + self.connection = sqlite3.connect(SQLiteLockFile.testdb) + + c = self.connection.cursor() + try: + c.execute("create table locks" + "(" + " lock_file varchar(32)," + " unique_name varchar(32)" + ")") + except sqlite3.OperationalError: + pass + else: + self.connection.commit() + import atexit + atexit.register(os.unlink, SQLiteLockFile.testdb) + + def acquire(self, timeout=None): + timeout = timeout if timeout is not None else self.timeout + end_time = time.time() + if timeout is not None and timeout > 0: + end_time += timeout + + if timeout is None: + wait = 0.1 + elif timeout <= 0: + wait = 0 + else: + wait = timeout / 10 + + cursor = self.connection.cursor() + + while True: + if not self.is_locked(): + # Not locked. Try to lock it. + cursor.execute("insert into locks" + " (lock_file, unique_name)" + " values" + " (?, ?)", + (self.lock_file, self.unique_name)) + self.connection.commit() + + # Check to see if we are the only lock holder. + cursor.execute("select * from locks" + " where unique_name = ?", + (self.unique_name,)) + rows = cursor.fetchall() + if len(rows) > 1: + # Nope. Someone else got there. Remove our lock. + cursor.execute("delete from locks" + " where unique_name = ?", + (self.unique_name,)) + self.connection.commit() + else: + # Yup. We're done, so go home. + return + else: + # Check to see if we are the only lock holder. + cursor.execute("select * from locks" + " where unique_name = ?", + (self.unique_name,)) + rows = cursor.fetchall() + if len(rows) == 1: + # We're the locker, so go home. + return + + # Maybe we should wait a bit longer. + if timeout is not None and time.time() > end_time: + if timeout > 0: + # No more waiting. + raise LockTimeout("Timeout waiting to acquire" + " lock for %s" % + self.path) + else: + # Someone else has the lock and we are impatient.. + raise AlreadyLocked("%s is already locked" % self.path) + + # Well, okay. We'll give it a bit longer. + time.sleep(wait) + + def release(self): + if not self.is_locked(): + raise NotLocked("%s is not locked" % self.path) + if not self.i_am_locking(): + raise NotMyLock("%s is locked, but not by me (by %s)" % + (self.unique_name, self._who_is_locking())) + cursor = self.connection.cursor() + cursor.execute("delete from locks" + " where unique_name = ?", + (self.unique_name,)) + self.connection.commit() + + def _who_is_locking(self): + cursor = self.connection.cursor() + cursor.execute("select unique_name from locks" + " where lock_file = ?", + (self.lock_file,)) + return cursor.fetchone()[0] + + def is_locked(self): + cursor = self.connection.cursor() + cursor.execute("select * from locks" + " where lock_file = ?", + (self.lock_file,)) + rows = cursor.fetchall() + return not not rows + + def i_am_locking(self): + cursor = self.connection.cursor() + cursor.execute("select * from locks" + " where lock_file = ?" + " and unique_name = ?", + (self.lock_file, self.unique_name)) + return not not cursor.fetchall() + + def break_lock(self): + cursor = self.connection.cursor() + cursor.execute("delete from locks" + " where lock_file = ?", + (self.lock_file,)) + self.connection.commit()