diff env/lib/python3.7/site-packages/planemo/engine/toil.py @ 0:26e78fe6e8c4 draft

"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.7/site-packages/planemo/engine/toil.py	Sat May 02 07:14:21 2020 -0400
@@ -0,0 +1,24 @@
+"""Module contianing the :class:`ToilEngine` implementation of :class:`Engine`."""
+
+from planemo import cwl
+from planemo.runnable import RunnableType
+from .interface import BaseEngine
+
+
+class ToilEngine(BaseEngine):
+    """An :class:`Engine` implementation backed by Toil.
+
+    More information on toil can be found at https://github.com/BD2KGenomics/toil.
+    """
+
+    handled_runnable_types = [RunnableType.cwl_tool, RunnableType.cwl_workflow]
+
+    def _run(self, runnable, job_path):
+        """Run CWL job using Toil."""
+        path = runnable.path
+        return cwl.run_toil(self._ctx, path, job_path, **self._kwds)
+
+
+__all__ = (
+    "ToilEngine",
+)