Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/planemo/engine/toil.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/planemo/engine/toil.py Sat May 02 07:14:21 2020 -0400 @@ -0,0 +1,24 @@ +"""Module contianing the :class:`ToilEngine` implementation of :class:`Engine`.""" + +from planemo import cwl +from planemo.runnable import RunnableType +from .interface import BaseEngine + + +class ToilEngine(BaseEngine): + """An :class:`Engine` implementation backed by Toil. + + More information on toil can be found at https://github.com/BD2KGenomics/toil. + """ + + handled_runnable_types = [RunnableType.cwl_tool, RunnableType.cwl_workflow] + + def _run(self, runnable, job_path): + """Run CWL job using Toil.""" + path = runnable.path + return cwl.run_toil(self._ctx, path, job_path, **self._kwds) + + +__all__ = ( + "ToilEngine", +)