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annotate env/lib/python3.7/site-packages/planemo/engine/toil.py @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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1 """Module contianing the :class:`ToilEngine` implementation of :class:`Engine`."""
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3 from planemo import cwl
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4 from planemo.runnable import RunnableType
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5 from .interface import BaseEngine
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8 class ToilEngine(BaseEngine):
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9 """An :class:`Engine` implementation backed by Toil.
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11 More information on toil can be found at https://github.com/BD2KGenomics/toil.
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12 """
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14 handled_runnable_types = [RunnableType.cwl_tool, RunnableType.cwl_workflow]
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16 def _run(self, runnable, job_path):
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17 """Run CWL job using Toil."""
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18 path = runnable.path
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19 return cwl.run_toil(self._ctx, path, job_path, **self._kwds)
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22 __all__ = (
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23 "ToilEngine",
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24 )