Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/planemo/galaxy/distro_tools.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/planemo/galaxy/distro_tools.py Sat May 02 07:14:21 2020 -0400 @@ -0,0 +1,99 @@ +# file auto generated with scripts/tool_index_to_id_map.py +DISTRO_TOOLS_ID_TO_PATH = { + "ucsc_table_direct1": "data_source/ucsc_tablebrowser.xml", + "MAF_To_Fasta1": "maf/maf_to_fasta.xml", + "ratmine": "data_source/ratmine.xml", + "mousemine": "data_source/mousemine.xml", + "__SORTLIST__": "${model_tools_path}/sort_collection_list.xml", + "__UNZIP_COLLECTION__": "${model_tools_path}/unzip_collection.xml", + "cbi_rice_mart": "data_source/cbi_rice_mart.xml", + "ucsc_table_direct_archaea1": "data_source/ucsc_tablebrowser_archaea.xml", + "wig_to_bigWig": "filters/wig_to_bigwig.xml", + "ebi_sra_main": "data_source/ebi_sra.xml", + "metabolicmine": "data_source/metabolicmine.xml", + "Extract_features1": "filters/gff/extract_GFF_Features.xml", + "upload1": "data_source/upload.xml", + "wc_gnu": "filters/wc_gnu.xml", + "join1": "filters/joiner.xml", + "random_lines1": "filters/randomlines.xml", + "modENCODEfly": "data_source/fly_modencode.xml", + "gff_filter_by_attribute": "filters/gff/gff_filter_by_attribute.xml", + "gtf2bedgraph": "filters/gtf2bedgraph.xml", + "ChangeCase": "filters/changeCase.xml", + "__FLATTEN__": "${model_tools_path}/flatten_collection.xml", + "wiggle2simple1": "filters/wiggle_to_simple.xml", + "GeneBed_Maf_Fasta2": "maf/genebed_maf_to_fasta.xml", + "trimmer": "filters/trimmer.xml", + "createInterval": "filters/CreateInterval.xml", + "gff_filter_by_feature_count": "filters/gff/gff_filter_by_feature_count.xml", + "Interval2Maf1": "maf/interval2maf.xml", + "genomespace_exporter": "genomespace/genomespace_exporter.xml", + "Show tail1": "filters/tailWrapper.xml", + "barchart_gnuplot": "plotting/bar_chart.xml", + "microbial_import1": "data_source/microbial_import.xml", + "axt_to_concat_fasta": "filters/axt_to_concat_fasta.xml", + "__FILTER_FROM_FILE__": "${model_tools_path}/filter_from_file.xml", + "Interval2Maf_pairwise1": "maf/interval2maf_pairwise.xml", + "Show beginning1": "filters/headWrapper.xml", + "axt_to_lav_1": "filters/axt_to_lav.xml", + "modmine": "data_source/modmine.xml", + "__EXPORT_HISTORY__": "${model_tools_path}/imp_exp/exp_history_to_archive.xml", + "MAF_Thread_For_Species1": "maf/maf_thread_for_species.xml", + "vcf_to_maf_customtrack1": "maf/vcf_to_maf_customtrack.xml", + "MAF_To_BED1": "maf/maf_to_bed.xml", + "__DATA_FETCH__": "${model_tools_path}/data_fetch.xml", + "__IMPORT_HISTORY__": "${model_tools_path}/imp_exp/imp_history_from_archive.xml", + "biomart": "data_source/biomart.xml", + "Sff_extractor": "filters/sff_extractor.xml", + "secure_hash_message_digest": "filters/secure_hash_message_digest.xml", + "MAF_Reverse_Complement_1": "maf/maf_reverse_complement.xml", + "mergeCols1": "filters/mergeCols.xml", + "gff2bed1": "filters/gff2bed.xml", + "Grouping1": "stats/grouping.xml", + "maf_limit_size1": "maf/maf_limit_size.xml", + "sort1": "filters/sorter.xml", + "Convert characters1": "filters/convert_characters.xml", + "MAF_To_Interval1": "maf/maf_to_interval.xml", + "MAF_filter": "maf/maf_filter.xml", + "MAF_split_blocks_by_species1": "maf/maf_split_by_species.xml", + "genomespace_importer": "genomespace/genomespace_importer.xml", + "gene2exon1": "filters/ucsc_gene_bed_to_exon_bed.xml", + "Cut1": "filters/cutWrapper.xml", + "Count1": "filters/uniq.xml", + "MAF_Limit_To_Species1": "maf/maf_limit_to_species.xml", + "ucsc_table_direct_test1": "data_source/ucsc_tablebrowser_test.xml", + "wormbase": "data_source/wormbase.xml", + "maf_stats1": "maf/maf_stats.xml", + "zebrafishmine": "data_source/zebrafishmine.xml", + "Paste1": "filters/pasteWrapper.xml", + "Interval_Maf_Merged_Fasta2": "maf/interval_maf_to_merged_fasta.xml", + "modENCODEworm": "data_source/worm_modencode.xml", + "gtf_filter_by_attribute_values_list": "filters/gff/gtf_filter_by_attribute_values_list.xml", + "Summary_Statistics1": "stats/gsummary.xml", + "qual_stats_boxplot": "plotting/boxplot.xml", + "cat1": "filters/catWrapper.xml", + "maf_by_block_number1": "maf/maf_by_block_number.xml", + "Grep1": "filters/grep.xml", + "eupathdb": "data_source/eupathdb.xml", + "__RELABEL_FROM_FILE__": "${model_tools_path}/relabel_from_file.xml", + "__ZIP_COLLECTION__": "${model_tools_path}/zip_collection.xml", + "lav_to_bed1": "filters/lav_to_bed.xml", + "comp1": "filters/compare.xml", + "bed_to_bigBed": "filters/bed_to_bigbed.xml", + "liftOver1": "extract/liftOver_wrapper.xml", + "bed2gff1": "filters/bed2gff.xml", + "__MERGE_COLLECTION__": "${model_tools_path}/merge_collection.xml", + "gramenemart": "data_source/gramene_mart.xml", + "hbvar": "data_source/hbvar.xml", + "yeastmine": "data_source/yeastmine.xml", + "Filter1": "stats/filtering.xml", + "flymine": "data_source/flymine.xml", + "wormbase_test": "data_source/wormbase_test.xml", + "__FILTER_FAILED_DATASETS__": "${model_tools_path}/filter_failed_collection.xml", + "Extract genomic DNA 1": "extract/extract_genomic_dna.xml", + "Remove beginning1": "filters/remove_beginning.xml", + "flymine_test": "data_source/flymine_test.xml", + "axt_to_fasta": "filters/axt_to_fasta.xml", + "addValue": "filters/fixedValueColumn.xml", + "__TAG_FROM_FILE__": "${model_tools_path}/tag_collection_from_file.xml" +}