annotate env/lib/python3.7/site-packages/planemo/galaxy/distro_tools.py @ 0:26e78fe6e8c4 draft

"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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1 # file auto generated with scripts/tool_index_to_id_map.py
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2 DISTRO_TOOLS_ID_TO_PATH = {
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3 "ucsc_table_direct1": "data_source/ucsc_tablebrowser.xml",
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4 "MAF_To_Fasta1": "maf/maf_to_fasta.xml",
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5 "ratmine": "data_source/ratmine.xml",
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6 "mousemine": "data_source/mousemine.xml",
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7 "__SORTLIST__": "${model_tools_path}/sort_collection_list.xml",
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8 "__UNZIP_COLLECTION__": "${model_tools_path}/unzip_collection.xml",
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9 "cbi_rice_mart": "data_source/cbi_rice_mart.xml",
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10 "ucsc_table_direct_archaea1": "data_source/ucsc_tablebrowser_archaea.xml",
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11 "wig_to_bigWig": "filters/wig_to_bigwig.xml",
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12 "ebi_sra_main": "data_source/ebi_sra.xml",
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13 "metabolicmine": "data_source/metabolicmine.xml",
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14 "Extract_features1": "filters/gff/extract_GFF_Features.xml",
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15 "upload1": "data_source/upload.xml",
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16 "wc_gnu": "filters/wc_gnu.xml",
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17 "join1": "filters/joiner.xml",
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18 "random_lines1": "filters/randomlines.xml",
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19 "modENCODEfly": "data_source/fly_modencode.xml",
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20 "gff_filter_by_attribute": "filters/gff/gff_filter_by_attribute.xml",
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21 "gtf2bedgraph": "filters/gtf2bedgraph.xml",
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22 "ChangeCase": "filters/changeCase.xml",
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23 "__FLATTEN__": "${model_tools_path}/flatten_collection.xml",
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24 "wiggle2simple1": "filters/wiggle_to_simple.xml",
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25 "GeneBed_Maf_Fasta2": "maf/genebed_maf_to_fasta.xml",
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26 "trimmer": "filters/trimmer.xml",
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27 "createInterval": "filters/CreateInterval.xml",
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28 "gff_filter_by_feature_count": "filters/gff/gff_filter_by_feature_count.xml",
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29 "Interval2Maf1": "maf/interval2maf.xml",
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30 "genomespace_exporter": "genomespace/genomespace_exporter.xml",
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31 "Show tail1": "filters/tailWrapper.xml",
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32 "barchart_gnuplot": "plotting/bar_chart.xml",
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33 "microbial_import1": "data_source/microbial_import.xml",
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34 "axt_to_concat_fasta": "filters/axt_to_concat_fasta.xml",
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35 "__FILTER_FROM_FILE__": "${model_tools_path}/filter_from_file.xml",
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36 "Interval2Maf_pairwise1": "maf/interval2maf_pairwise.xml",
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37 "Show beginning1": "filters/headWrapper.xml",
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38 "axt_to_lav_1": "filters/axt_to_lav.xml",
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39 "modmine": "data_source/modmine.xml",
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40 "__EXPORT_HISTORY__": "${model_tools_path}/imp_exp/exp_history_to_archive.xml",
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41 "MAF_Thread_For_Species1": "maf/maf_thread_for_species.xml",
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42 "vcf_to_maf_customtrack1": "maf/vcf_to_maf_customtrack.xml",
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43 "MAF_To_BED1": "maf/maf_to_bed.xml",
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44 "__DATA_FETCH__": "${model_tools_path}/data_fetch.xml",
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45 "__IMPORT_HISTORY__": "${model_tools_path}/imp_exp/imp_history_from_archive.xml",
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46 "biomart": "data_source/biomart.xml",
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47 "Sff_extractor": "filters/sff_extractor.xml",
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48 "secure_hash_message_digest": "filters/secure_hash_message_digest.xml",
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49 "MAF_Reverse_Complement_1": "maf/maf_reverse_complement.xml",
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50 "mergeCols1": "filters/mergeCols.xml",
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51 "gff2bed1": "filters/gff2bed.xml",
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52 "Grouping1": "stats/grouping.xml",
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53 "maf_limit_size1": "maf/maf_limit_size.xml",
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54 "sort1": "filters/sorter.xml",
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55 "Convert characters1": "filters/convert_characters.xml",
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56 "MAF_To_Interval1": "maf/maf_to_interval.xml",
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57 "MAF_filter": "maf/maf_filter.xml",
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58 "MAF_split_blocks_by_species1": "maf/maf_split_by_species.xml",
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59 "genomespace_importer": "genomespace/genomespace_importer.xml",
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60 "gene2exon1": "filters/ucsc_gene_bed_to_exon_bed.xml",
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61 "Cut1": "filters/cutWrapper.xml",
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62 "Count1": "filters/uniq.xml",
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63 "MAF_Limit_To_Species1": "maf/maf_limit_to_species.xml",
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64 "ucsc_table_direct_test1": "data_source/ucsc_tablebrowser_test.xml",
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65 "wormbase": "data_source/wormbase.xml",
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66 "maf_stats1": "maf/maf_stats.xml",
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67 "zebrafishmine": "data_source/zebrafishmine.xml",
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68 "Paste1": "filters/pasteWrapper.xml",
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69 "Interval_Maf_Merged_Fasta2": "maf/interval_maf_to_merged_fasta.xml",
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70 "modENCODEworm": "data_source/worm_modencode.xml",
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71 "gtf_filter_by_attribute_values_list": "filters/gff/gtf_filter_by_attribute_values_list.xml",
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72 "Summary_Statistics1": "stats/gsummary.xml",
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73 "qual_stats_boxplot": "plotting/boxplot.xml",
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74 "cat1": "filters/catWrapper.xml",
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75 "maf_by_block_number1": "maf/maf_by_block_number.xml",
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76 "Grep1": "filters/grep.xml",
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77 "eupathdb": "data_source/eupathdb.xml",
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78 "__RELABEL_FROM_FILE__": "${model_tools_path}/relabel_from_file.xml",
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79 "__ZIP_COLLECTION__": "${model_tools_path}/zip_collection.xml",
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80 "lav_to_bed1": "filters/lav_to_bed.xml",
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81 "comp1": "filters/compare.xml",
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82 "bed_to_bigBed": "filters/bed_to_bigbed.xml",
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83 "liftOver1": "extract/liftOver_wrapper.xml",
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84 "bed2gff1": "filters/bed2gff.xml",
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85 "__MERGE_COLLECTION__": "${model_tools_path}/merge_collection.xml",
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86 "gramenemart": "data_source/gramene_mart.xml",
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87 "hbvar": "data_source/hbvar.xml",
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88 "yeastmine": "data_source/yeastmine.xml",
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89 "Filter1": "stats/filtering.xml",
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90 "flymine": "data_source/flymine.xml",
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91 "wormbase_test": "data_source/wormbase_test.xml",
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92 "__FILTER_FAILED_DATASETS__": "${model_tools_path}/filter_failed_collection.xml",
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93 "Extract genomic DNA 1": "extract/extract_genomic_dna.xml",
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94 "Remove beginning1": "filters/remove_beginning.xml",
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95 "flymine_test": "data_source/flymine_test.xml",
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96 "axt_to_fasta": "filters/axt_to_fasta.xml",
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97 "addValue": "filters/fixedValueColumn.xml",
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98 "__TAG_FROM_FILE__": "${model_tools_path}/tag_collection_from_file.xml"
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99 }