Mercurial > repos > shellac > guppy_basecaller
diff env/bin/instance_events @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author | shellac |
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date | Mon, 01 Jun 2020 08:59:25 -0400 |
parents | 79f47841a781 |
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--- a/env/bin/instance_events Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,145 +0,0 @@ -#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3 -# Copyright (c) 2011 Jim Browne http://www.42lines.net -# Borrows heavily from boto/bin/list_instances which has no attribution -# -# Permission is hereby granted, free of charge, to any person obtaining a -# copy of this software and associated documentation files (the -# "Software"), to deal in the Software without restriction, including -# without limitation the rights to use, copy, modify, merge, publish, dis- -# tribute, sublicense, and/or sell copies of the Software, and to permit -# persons to whom the Software is furnished to do so, subject to the fol- -# lowing conditions: -# -# The above copyright notice and this permission notice shall be included -# in all copies or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS -# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL- -# ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT -# SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, -# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS - -VERSION="0.1" -usage = """%prog [options] -Options: - -h, --help show help message (including options list) and exit -""" - -from operator import itemgetter - -HEADERS = { - 'ID': {'get': itemgetter('id'), 'length':14}, - 'Zone': {'get': itemgetter('zone'), 'length':14}, - 'Hostname': {'get': itemgetter('dns'), 'length':20}, - 'Code': {'get': itemgetter('code'), 'length':18}, - 'Description': {'get': itemgetter('description'), 'length':30}, - 'NotBefore': {'get': itemgetter('not_before'), 'length':25}, - 'NotAfter': {'get': itemgetter('not_after'), 'length':25}, - 'T:': {'length': 30}, -} - -def get_column(name, event=None): - if name.startswith('T:'): - return event[name] - return HEADERS[name]['get'](event) - -def list(region, headers, order, completed): - """List status events for all instances in a given region""" - - import re - - ec2 = boto.connect_ec2(region=region) - - reservations = ec2.get_all_reservations() - - instanceinfo = {} - events = {} - - displaytags = [ x for x in headers if x.startswith('T:') ] - - # Collect the tag for every possible instance - for res in reservations: - for instance in res.instances: - iid = instance.id - instanceinfo[iid] = {} - for tagname in displaytags: - _, tag = tagname.split(':', 1) - instanceinfo[iid][tagname] = instance.tags.get(tag,'') - instanceinfo[iid]['dns'] = instance.public_dns_name - - stats = ec2.get_all_instance_status() - - for stat in stats: - if stat.events: - for event in stat.events: - events[stat.id] = {} - events[stat.id]['id'] = stat.id - events[stat.id]['dns'] = instanceinfo[stat.id]['dns'] - events[stat.id]['zone'] = stat.zone - for tag in displaytags: - events[stat.id][tag] = instanceinfo[stat.id][tag] - events[stat.id]['code'] = event.code - events[stat.id]['description'] = event.description - events[stat.id]['not_before'] = event.not_before - events[stat.id]['not_after'] = event.not_after - if completed and re.match('^\[Completed\]',event.description): - events[stat.id]['not_before'] = 'Completed' - events[stat.id]['not_after'] = 'Completed' - - # Create format string - format_string = "" - for h in headers: - if h.startswith('T:'): - format_string += "%%-%ds" % HEADERS['T:']['length'] - else: - format_string += "%%-%ds" % HEADERS[h]['length'] - - - print format_string % headers - print "-" * len(format_string % headers) - - for instance in sorted(events, - key=lambda ev: get_column(order, events[ev])): - e = events[instance] - print format_string % tuple(get_column(h, e) for h in headers) - -if __name__ == "__main__": - import boto - from optparse import OptionParser - from boto.ec2 import regions - - parser = OptionParser(version=VERSION, usage=usage) - parser.add_option("-a", "--all", help="check all regions", dest="all", default=False,action="store_true") - parser.add_option("-r", "--region", help="region to check (default us-east-1)", dest="region", default="us-east-1") - parser.add_option("-H", "--headers", help="Set headers (use 'T:tagname' for including tags)", default=None, action="store", dest="headers", metavar="ID,Zone,Hostname,Code,Description,NotBefore,NotAfter,T:Name") - parser.add_option("-S", "--sort", help="Header for sort order", default=None, action="store", dest="order",metavar="HeaderName") - parser.add_option("-c", "--completed", help="List time fields as \"Completed\" for completed events (Default: false)", default=False, action="store_true", dest="completed") - - (options, args) = parser.parse_args() - - if options.headers: - headers = tuple(options.headers.split(',')) - else: - headers = ('ID', 'Zone', 'Hostname', 'Code', 'NotBefore', 'NotAfter') - - if options.order: - order = options.order - else: - order = 'ID' - - if options.all: - for r in regions(): - print "Region %s" % r.name - list(r, headers, order, options.completed) - else: - # Connect the region - for r in regions(): - if r.name == options.region: - region = r - break - else: - print "Region %s not found." % options.region - sys.exit(1) - - list(r, headers, order, options.completed)