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annotate env/lib/python3.9/site-packages/planemo/engine/test.py @ 0:4f3585e2f14b draft default tip

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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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1 from planemo.engine import (
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2 engine_context,
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3 )
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4 from planemo.galaxy import galaxy_config
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5 from planemo.galaxy.config import _find_test_data
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6 from planemo.galaxy.test import (
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7 handle_reports_and_summary,
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8 run_in_config,
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9 )
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10 from planemo.runnable import (
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11 for_paths,
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12 RunnableType,
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13 )
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14
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15
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16 def test_runnables(ctx, runnables, original_paths=None, **kwds):
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17 """Return exit code indicating test or failure."""
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18 engine_type = kwds["engine"]
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19 test_engine_testable = {RunnableType.galaxy_tool, RunnableType.galaxy_datamanager, RunnableType.directory}
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20 enable_test_engines = any(r.type not in test_engine_testable for r in runnables)
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21 enable_test_engines = enable_test_engines or engine_type != "galaxy"
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22 if enable_test_engines:
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23 ctx.vlog("Using test engine type %s" % engine_type)
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24 with engine_context(ctx, **kwds) as engine:
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25 test_data = engine.test(runnables)
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26 ctx.vlog("engine.test returning [%s]" % test_data)
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27 return_value = handle_reports_and_summary(ctx, test_data.structured_data, kwds=kwds)
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28 else:
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29 ctx.vlog("Running traditional Galaxy tool tests using run_tests.sh in Galaxy root %s" % engine_type)
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30 kwds["for_tests"] = True
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31 if kwds.get('update_test_data'):
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32 non_copied_runnables = for_paths(original_paths)
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33 kwds['test_data_target_dir'] = _find_test_data(non_copied_runnables, **kwds)
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34 with galaxy_config(ctx, runnables, **kwds) as config:
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35 return_value = run_in_config(ctx, config, **kwds)
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36 return return_value