Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/planemo/engine/test.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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from planemo.engine import ( engine_context, ) from planemo.galaxy import galaxy_config from planemo.galaxy.config import _find_test_data from planemo.galaxy.test import ( handle_reports_and_summary, run_in_config, ) from planemo.runnable import ( for_paths, RunnableType, ) def test_runnables(ctx, runnables, original_paths=None, **kwds): """Return exit code indicating test or failure.""" engine_type = kwds["engine"] test_engine_testable = {RunnableType.galaxy_tool, RunnableType.galaxy_datamanager, RunnableType.directory} enable_test_engines = any(r.type not in test_engine_testable for r in runnables) enable_test_engines = enable_test_engines or engine_type != "galaxy" if enable_test_engines: ctx.vlog("Using test engine type %s" % engine_type) with engine_context(ctx, **kwds) as engine: test_data = engine.test(runnables) ctx.vlog("engine.test returning [%s]" % test_data) return_value = handle_reports_and_summary(ctx, test_data.structured_data, kwds=kwds) else: ctx.vlog("Running traditional Galaxy tool tests using run_tests.sh in Galaxy root %s" % engine_type) kwds["for_tests"] = True if kwds.get('update_test_data'): non_copied_runnables = for_paths(original_paths) kwds['test_data_target_dir'] = _find_test_data(non_copied_runnables, **kwds) with galaxy_config(ctx, runnables, **kwds) as config: return_value = run_in_config(ctx, config, **kwds) return return_value