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annotate env/lib/python3.9/site-packages/schema_salad/codegen.py @ 0:4f3585e2f14b draft default tip

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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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0
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1 """Generate langauge specific loaders for a particular SALAD schema."""
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2 import sys
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3 from io import TextIOWrapper
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4 from typing import (
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5 Any,
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6 Dict,
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7 List,
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8 MutableMapping,
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9 MutableSequence,
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10 Optional,
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11 TextIO,
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12 Union,
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13 )
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14
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15 from . import schema
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16 from .codegen_base import CodeGenBase
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17 from .exceptions import SchemaSaladException
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18 from .java_codegen import JavaCodeGen
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19 from .python_codegen import PythonCodeGen
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20 from .ref_resolver import Loader
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21 from .schema import shortname
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22 from .utils import aslist
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23
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24
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25 def codegen(
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26 lang: str,
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27 i: List[Dict[str, str]],
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28 schema_metadata: Dict[str, Any],
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29 loader: Loader,
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30 target: Optional[str] = None,
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31 examples: Optional[str] = None,
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32 package: Optional[str] = None,
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33 copyright: Optional[str] = None,
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34 ) -> None:
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35 """Generate classes with loaders for the given Schema Salad description."""
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36
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37 j = schema.extend_and_specialize(i, loader)
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38
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39 gen = None # type: Optional[CodeGenBase]
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40 if lang == "python":
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41 if target:
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42 dest: Union[TextIOWrapper, TextIO] = open(
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43 target, mode="w", encoding="utf-8"
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44 )
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45 else:
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46 dest = sys.stdout
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47 gen = PythonCodeGen(dest, copyright=copyright)
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48 elif lang == "java":
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49 gen = JavaCodeGen(
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50 schema_metadata.get("$base", schema_metadata.get("id")),
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51 target=target,
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52 examples=examples,
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53 package=package,
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54 copyright=copyright,
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55 )
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56 else:
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57 raise SchemaSaladException(f"Unsupported code generation language '{lang}'")
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58
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59 gen.prologue()
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60
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61 document_roots = []
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62
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63 for rec in j:
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64 if rec["type"] in ("enum", "record"):
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65 gen.type_loader(rec)
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66 gen.add_vocab(shortname(rec["name"]), rec["name"])
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67
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68 for rec in j:
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69 if rec["type"] == "enum":
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70 for symbol in rec["symbols"]:
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71 gen.add_vocab(shortname(symbol), symbol)
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72
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73 if rec["type"] == "record":
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74 if rec.get("documentRoot"):
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75 document_roots.append(rec["name"])
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76
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77 field_names = []
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78 optional_fields = set()
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79 for field in rec.get("fields", []):
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80 field_name = shortname(field["name"])
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81 field_names.append(field_name)
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82 tp = field["type"]
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83 if (
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84 isinstance(tp, MutableSequence)
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85 and tp[0] == "https://w3id.org/cwl/salad#null"
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86 ):
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87 optional_fields.add(field_name)
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88
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89 idfield = ""
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90 for field in rec.get("fields", []):
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91 if field.get("jsonldPredicate") == "@id":
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92 idfield = field.get("name")
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93
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94 gen.begin_class(
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95 rec["name"],
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96 aslist(rec.get("extends", [])),
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97 rec.get("doc", ""),
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98 rec.get("abstract", False),
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99 field_names,
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100 idfield,
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101 optional_fields,
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102 )
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103 gen.add_vocab(shortname(rec["name"]), rec["name"])
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104
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105 for field in rec.get("fields", []):
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106 if field.get("jsonldPredicate") == "@id":
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107 subscope = field.get("subscope")
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108 fieldpred = field["name"]
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109 optional = bool("https://w3id.org/cwl/salad#null" in field["type"])
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110 uri_loader = gen.uri_loader(
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111 gen.type_loader(field["type"]), True, False, None
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112 )
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113 gen.declare_id_field(
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114 fieldpred, uri_loader, field.get("doc"), optional, subscope
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115 )
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116 break
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117
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118 for field in rec.get("fields", []):
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119 optional = bool("https://w3id.org/cwl/salad#null" in field["type"])
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120 type_loader = gen.type_loader(field["type"])
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121 jld = field.get("jsonldPredicate")
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122 fieldpred = field["name"]
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123 subscope = None
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124
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125 if isinstance(jld, MutableMapping):
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126 ref_scope = jld.get("refScope")
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127 if jld.get("typeDSL"):
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128 type_loader = gen.typedsl_loader(type_loader, ref_scope)
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129 elif jld.get("secondaryFilesDSL"):
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130 type_loader = gen.secondaryfilesdsl_loader(type_loader)
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131 elif jld.get("subscope"):
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132 subscope = jld.get("subscope")
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133 elif jld.get("_type") == "@id":
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134 type_loader = gen.uri_loader(
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135 type_loader, jld.get("identity", False), False, ref_scope
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136 )
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137 elif jld.get("_type") == "@vocab":
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138 type_loader = gen.uri_loader(
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139 type_loader, False, True, ref_scope
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140 )
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141
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142 map_subject = jld.get("mapSubject")
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143 if map_subject:
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144 type_loader = gen.idmap_loader(
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145 field["name"],
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146 type_loader,
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147 map_subject,
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148 jld.get("mapPredicate"),
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149 )
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150
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151 if "_id" in jld and jld["_id"][0] != "@":
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152 fieldpred = jld["_id"]
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153
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154 if jld == "@id":
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155 continue
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156
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157 gen.declare_field(fieldpred, type_loader, field.get("doc"), optional)
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158
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159 gen.end_class(rec["name"], field_names)
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160
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161 root_type = list(document_roots)
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162 root_type.append({"type": "array", "items": document_roots})
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163
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164 gen.epilogue(gen.type_loader(root_type))