Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/schema_salad/codegen.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/schema_salad/codegen.py Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,164 @@ +"""Generate langauge specific loaders for a particular SALAD schema.""" +import sys +from io import TextIOWrapper +from typing import ( + Any, + Dict, + List, + MutableMapping, + MutableSequence, + Optional, + TextIO, + Union, +) + +from . import schema +from .codegen_base import CodeGenBase +from .exceptions import SchemaSaladException +from .java_codegen import JavaCodeGen +from .python_codegen import PythonCodeGen +from .ref_resolver import Loader +from .schema import shortname +from .utils import aslist + + +def codegen( + lang: str, + i: List[Dict[str, str]], + schema_metadata: Dict[str, Any], + loader: Loader, + target: Optional[str] = None, + examples: Optional[str] = None, + package: Optional[str] = None, + copyright: Optional[str] = None, +) -> None: + """Generate classes with loaders for the given Schema Salad description.""" + + j = schema.extend_and_specialize(i, loader) + + gen = None # type: Optional[CodeGenBase] + if lang == "python": + if target: + dest: Union[TextIOWrapper, TextIO] = open( + target, mode="w", encoding="utf-8" + ) + else: + dest = sys.stdout + gen = PythonCodeGen(dest, copyright=copyright) + elif lang == "java": + gen = JavaCodeGen( + schema_metadata.get("$base", schema_metadata.get("id")), + target=target, + examples=examples, + package=package, + copyright=copyright, + ) + else: + raise SchemaSaladException(f"Unsupported code generation language '{lang}'") + + gen.prologue() + + document_roots = [] + + for rec in j: + if rec["type"] in ("enum", "record"): + gen.type_loader(rec) + gen.add_vocab(shortname(rec["name"]), rec["name"]) + + for rec in j: + if rec["type"] == "enum": + for symbol in rec["symbols"]: + gen.add_vocab(shortname(symbol), symbol) + + if rec["type"] == "record": + if rec.get("documentRoot"): + document_roots.append(rec["name"]) + + field_names = [] + optional_fields = set() + for field in rec.get("fields", []): + field_name = shortname(field["name"]) + field_names.append(field_name) + tp = field["type"] + if ( + isinstance(tp, MutableSequence) + and tp[0] == "https://w3id.org/cwl/salad#null" + ): + optional_fields.add(field_name) + + idfield = "" + for field in rec.get("fields", []): + if field.get("jsonldPredicate") == "@id": + idfield = field.get("name") + + gen.begin_class( + rec["name"], + aslist(rec.get("extends", [])), + rec.get("doc", ""), + rec.get("abstract", False), + field_names, + idfield, + optional_fields, + ) + gen.add_vocab(shortname(rec["name"]), rec["name"]) + + for field in rec.get("fields", []): + if field.get("jsonldPredicate") == "@id": + subscope = field.get("subscope") + fieldpred = field["name"] + optional = bool("https://w3id.org/cwl/salad#null" in field["type"]) + uri_loader = gen.uri_loader( + gen.type_loader(field["type"]), True, False, None + ) + gen.declare_id_field( + fieldpred, uri_loader, field.get("doc"), optional, subscope + ) + break + + for field in rec.get("fields", []): + optional = bool("https://w3id.org/cwl/salad#null" in field["type"]) + type_loader = gen.type_loader(field["type"]) + jld = field.get("jsonldPredicate") + fieldpred = field["name"] + subscope = None + + if isinstance(jld, MutableMapping): + ref_scope = jld.get("refScope") + if jld.get("typeDSL"): + type_loader = gen.typedsl_loader(type_loader, ref_scope) + elif jld.get("secondaryFilesDSL"): + type_loader = gen.secondaryfilesdsl_loader(type_loader) + elif jld.get("subscope"): + subscope = jld.get("subscope") + elif jld.get("_type") == "@id": + type_loader = gen.uri_loader( + type_loader, jld.get("identity", False), False, ref_scope + ) + elif jld.get("_type") == "@vocab": + type_loader = gen.uri_loader( + type_loader, False, True, ref_scope + ) + + map_subject = jld.get("mapSubject") + if map_subject: + type_loader = gen.idmap_loader( + field["name"], + type_loader, + map_subject, + jld.get("mapPredicate"), + ) + + if "_id" in jld and jld["_id"][0] != "@": + fieldpred = jld["_id"] + + if jld == "@id": + continue + + gen.declare_field(fieldpred, type_loader, field.get("doc"), optional) + + gen.end_class(rec["name"], field_names) + + root_type = list(document_roots) + root_type.append({"type": "array", "items": document_roots}) + + gen.epilogue(gen.type_loader(root_type))