Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/gxformat2/yaml.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 """YAML loading utilities for gxformat2.""" |
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2 from collections import OrderedDict |
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3 |
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4 try: |
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5 from galaxy.model.custom_types import MutationDict # type: ignore |
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6 except ImportError: |
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7 MutationDict = None |
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8 import yaml |
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9 |
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10 |
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11 def ordered_load_path(path: str, **kwds): |
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12 """Safe and ordered load of YAML from specified path.""" |
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13 with open(path, "r") as f: |
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14 return ordered_load(f, **kwds) |
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15 |
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16 |
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17 def ordered_load(stream, Loader=yaml.SafeLoader, **kwds): |
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18 """Safe and ordered load of YAML from stream.""" |
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19 class OrderedLoader(Loader): |
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20 pass |
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21 |
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22 def construct_mapping(loader, node): |
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23 loader.flatten_mapping(node) |
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24 return OrderedDict(loader.construct_pairs(node)) |
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25 |
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26 OrderedLoader.add_constructor( |
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27 yaml.resolver.BaseResolver.DEFAULT_MAPPING_TAG, |
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28 construct_mapping) |
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29 |
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30 return yaml.load(stream, OrderedLoader, **kwds) |
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31 |
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32 |
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33 def ordered_dump(data, stream=None, Dumper=yaml.SafeDumper, **kwds): |
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34 """Safe and ordered dump of YAML to stream.""" |
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35 class OrderedDumper(Dumper): |
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36 pass |
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37 |
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38 def _dict_representer(dumper, data): |
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39 return dumper.represent_mapping( |
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40 yaml.resolver.BaseResolver.DEFAULT_MAPPING_TAG, |
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41 list(data.items())) |
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42 OrderedDumper.add_representer(OrderedDict, _dict_representer) |
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43 if MutationDict is not None: |
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44 OrderedDumper.add_representer(MutationDict, _dict_representer) |
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45 |
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46 return yaml.dump(data, stream, OrderedDumper, **kwds) |
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47 |
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48 |
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49 def ordered_dump_to_path(as_dict: dict, path: str): |
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50 """Safe and ordered dump of YAML to path.""" |
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51 with open(path, "w") as f: |
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52 ordered_dump(as_dict, f) |
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53 |
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54 |
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55 __all__ = ( |
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56 'ordered_dump', |
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57 'ordered_dump_to_path', |
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58 'ordered_load', |
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59 'ordered_load_path', |
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60 ) |