Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/gxformat2/yaml.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/gxformat2/yaml.py Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,60 @@ +"""YAML loading utilities for gxformat2.""" +from collections import OrderedDict + +try: + from galaxy.model.custom_types import MutationDict # type: ignore +except ImportError: + MutationDict = None +import yaml + + +def ordered_load_path(path: str, **kwds): + """Safe and ordered load of YAML from specified path.""" + with open(path, "r") as f: + return ordered_load(f, **kwds) + + +def ordered_load(stream, Loader=yaml.SafeLoader, **kwds): + """Safe and ordered load of YAML from stream.""" + class OrderedLoader(Loader): + pass + + def construct_mapping(loader, node): + loader.flatten_mapping(node) + return OrderedDict(loader.construct_pairs(node)) + + OrderedLoader.add_constructor( + yaml.resolver.BaseResolver.DEFAULT_MAPPING_TAG, + construct_mapping) + + return yaml.load(stream, OrderedLoader, **kwds) + + +def ordered_dump(data, stream=None, Dumper=yaml.SafeDumper, **kwds): + """Safe and ordered dump of YAML to stream.""" + class OrderedDumper(Dumper): + pass + + def _dict_representer(dumper, data): + return dumper.represent_mapping( + yaml.resolver.BaseResolver.DEFAULT_MAPPING_TAG, + list(data.items())) + OrderedDumper.add_representer(OrderedDict, _dict_representer) + if MutationDict is not None: + OrderedDumper.add_representer(MutationDict, _dict_representer) + + return yaml.dump(data, stream, OrderedDumper, **kwds) + + +def ordered_dump_to_path(as_dict: dict, path: str): + """Safe and ordered dump of YAML to path.""" + with open(path, "w") as f: + ordered_dump(as_dict, f) + + +__all__ = ( + 'ordered_dump', + 'ordered_dump_to_path', + 'ordered_load', + 'ordered_load_path', +)