Mercurial > repos > shians > shrnaseq

diff hairpinTool.xml @ 15:5a917ea5bed2

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- Fixed read requirement report statistic.
author shian_su <registertonysu@gmail.com>
date Mon, 12 Jan 2015 16:31:48 +1100
parents 44130e484a97
children 438f2733bc27
line wrap: on
line diff
--- a/hairpinTool.xml	Wed Nov 19 11:05:03 2014 +1100
+++ b/hairpinTool.xml	Mon Jan 12 16:31:48 2015 +1100
@@ -81,7 +81,7 @@
                 #end if
                 
                 #if $inputOpt.secondaryFactor.secFactorOpt=="yes":
-                  $inputOpt.secondaryFactor.secFactName
+                  "$inputOpt.secondaryFactor.secFactName"
                 #else:
                   "none"
                 #end if
@@ -96,23 +96,23 @@
                   -Inf
                 #end if
           
-                $fdr
-                $lfc
-                $direction
-                $workMode.mode
-                $outFile
-                $outFile.files_path
+                "$fdr"
+                "$lfc"
+                "$direction"
+                "$workMode.mode"
+                "$outFile"
+                "$outFile.files_path"
           
                 #if $workMode.mode=="classic":
                   "$workMode.pair1"
                   "$workMode.pair2"
                 #elif $workMode.mode=="glm":
                   "$workMode.contrast"
-                  $workMode.roast.roastOption
+                  "$workMode.roast.roastOption"
 
                   #if $workMode.roast.roastOption=="yes":
-                    $workMode.roast.hairpinReq
-                    $workMode.roast.select.selOption
+                    "$workMode.roast.hairpinReq"
+                    "$workMode.roast.select.selOption"
                     "$workMode.roast.select.selection"
                   #else:
                     0