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1 <tool id="fa-extract-sequence" name="Fasta Extract Sequence" version="1.0.0">
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2 <description>Extract a single sequence from a fasta file.</description>
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3 <command interpreter="perl">
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4 fa-extract-few.pl
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5 -f $dataset
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6 $id
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7 >
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8 $output
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9 </command>
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10 <inputs>
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11 <param name="dataset" type="data" format="fasta" label="fasta or multifasta file" help="fasta dataset to get statistics for."/>
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12 <param name="id" type="text" label="Sequence ID (or partial)" help="Name of the sequence to extract. Will also match partial names and return all matches." />
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13 </inputs>
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14 <outputs>
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15 <data name="output" format="fasta" label="${tool.name} on ${on_string}: Fasta"/>
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16 </outputs>
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17
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18 <help>
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19 **Fasta Extract Sequence**
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20 Extracts a fasta sequence from a multfasta by id (exact or partial)
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21
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22 Written by Torsten Seemann - Victorian Bioinformatics Consortium
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23
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24 Wrapped by Simon Gladman - Victorian Bioinformatics Consortium
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25
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26 ------
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27
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28 Outputs in fasta format.
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29
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30 ------
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31
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32 Inputs:
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33
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34 Fasta dataset
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35
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36 Sequence id
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37 </help>
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38 </tool>
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