Mercurial > repos > simon-gladman > snippy

changeset 1:e1b47f2236b6 draft

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Added more dependencies
author simon-gladman
date Mon, 06 Jun 2016 00:33:24 -0400
parents 0801bffdfcc8
children 2d400172381a
files snippy.xml tool_dependencies.xml
diffstat 2 files changed, 11 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/snippy.xml	Sun Jun 05 21:12:39 2016 -0400
+++ b/snippy.xml	Mon Jun 06 00:33:24 2016 -0400
@@ -2,7 +2,10 @@
     <requirements>
       <requirement type="package" version="3.0">snippy</requirement>
       <requirement type="package" version="1.2">samtools</requirement>
-      <requirement type="package" version="0.9.20">freebayes</requirement>
+      <requirement type="package" version="0_9_20_b040236">freebayes</requirement>
+      <requirement type="package" version="0.7.12">bwa</requirement>
+      <requirement type="package" version="0.1.11">vcftools</requirement>
+      <requirement type="package" version="4.0">snpeff</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
--- a/tool_dependencies.xml	Sun Jun 05 21:12:39 2016 -0400
+++ b/tool_dependencies.xml	Mon Jun 06 00:33:24 2016 -0400
@@ -6,10 +6,16 @@
     <package name="samtools" version="1.2">
         <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
-    <package name="freebayes" version="0.9.20">
+    <package name="freebayes" version="0_9_20_b040236">
         <repository changeset_revision="059e6e3d99cc" name="package_freebayes_0_9_20_b040236" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="bwa" version="0.7.12">
         <repository changeset_revision="6af9b24ddeee" name="package_bwa_0_7_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
+    <package name="vcfftools" version="0.1.11">
+        <repository changeset_revision="710efaae2ff8" name="package_vcftools_0_1_11" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="snpeff" version="4.0">
+        <repository changeset_revision="792d8f4485fb" name="package_snpeff_4_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
 </tool_dependency>