Mercurial > repos > simon-gladman > velvet_optimiser

changeset 0:b559512bebcc draft

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Uploaded
author simon-gladman
date Tue, 05 Feb 2013 19:18:47 -0500
parents
children 94dbee11c8a9
files INSTALL.txt
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
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+INSTALL.txt
+
+Velvet Optimiser Galaxy Toolshed Wrapper.
+
+REQUIREMENTS:
+
+The following must be installed and available in the PATH
+
+Perl >= 5.8
+BioPerl >= 1.4
+
+velveth and velvetg (version > 1.1)
+    http://www.ebi.ac.uk/~zerbino/velvet
+
+Velvet Optimiser version 2.2.5 or above.
+    http://bioinformatics.net.au/software.shtml
+
+TESTS:
+
+The following files must be placed in Galaxy's test-data directory:
+    - vopt_test_reads.dat
+    - vopt_test_contigs.dat
+