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comparison pyPRADA_1.2/tools/bwa-0.5.7-mh/main.h @ 0:acc2ca1a3ba4

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author siyuan
date Thu, 20 Feb 2014 00:44:58 -0500
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1 #ifndef BWA_MAIN_H
2 #define BWA_MAIN_H
3
4 #ifdef __cplusplus
5 extern "C" {
6 #endif
7
8 int bwa_fa2pac(int argc, char *argv[]);
9 int bwa_pac_rev(int argc, char *argv[]);
10 int bwa_pac2cspac(int argc, char *argv[]);
11 int bwa_pac2bwt(int argc, char *argv[]);
12 int bwa_bwtupdate(int argc, char *argv[]);
13 int bwa_bwt2sa(int argc, char *argv[]);
14 int bwa_index(int argc, char *argv[]);
15 int bwa_aln(int argc, char *argv[]);
16 int bwt_bwtgen_main(int argc, char *argv[]);
17
18 int bwa_sai2sam_se(int argc, char *argv[]);
19 int bwa_sai2sam_pe(int argc, char *argv[]);
20
21 int bwa_stdsw(int argc, char *argv[]);
22
23 int bwa_bwtsw2(int argc, char *argv[]);
24
25 #ifdef __cplusplus
26 }
27 #endif
28
29 #endif