--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pyPRADA_1.2/release_note	Thu Feb 20 00:44:58 2014 -0500
@@ -0,0 +1,28 @@
+PRADA: Pipeline for RnAseq Data Analysis
+
+AUTHOR: 		Siyuan Zheng, Wandaliz-Torres Garcia, Rahul Vegesna
+CONTACT: 		Siyuan Zheng (szheng2@mdanderson.org), Roel Verhaak (rverhaak@mdanderson.org)
+COPY RIGHT: 	Verhaak Lab,Department of Bioinformatics and Computational Biology
+				The University of Texas MD Anderson Cancer Center
+VERSION: 		1.2
+DATE:			02/16/2014
+REQUIRE:		Python v2.6 or v2.7; 
+Python Libs:	pysam, Biopython
+PLATFORM:		Linux, tested with PBS, B-shell and TC-shell
+
+CITATION
+PRADA: Pipeline for RNA sequencing Data Analysis
+Bioinformatics. Coming soon. 
+
+TOOLS INCLUDED:
+prada-fusion		genome-widely identify gene fusions 
+prada-preprocess	preprocess paired end RNAseq data
+prada-frame			predict functional consequences of gene fusions
+prada-homology		calculate gene sequence similarity
+prada-guess-ft		supervised search of a gene fusion
+prada-guess-if		supervised search of intragenic fusions (normal splicing excluded)
+
+WHAT'S NEW
+1. New configur allows more user customization to bwa alignment and PBS script. 
+2. Reorganized preprocess module for better control of BAM an FASTQ as input.
+3. A test data set is added.