Mercurial > repos > sybila > ebcsgen_pctl_parameter_synthesis
diff ebcsgen_pctl_parameter_synthesis.xml @ 0:cf609f659b21 draft
planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit a7263af5f87e39dd0d3d29924e530c88d83a5ee6
author | sybila |
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date | Fri, 07 Oct 2022 12:37:22 +0000 |
parents | |
children | 3bb6c1e9252e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ebcsgen_pctl_parameter_synthesis.xml Fri Oct 07 12:37:22 2022 +0000 @@ -0,0 +1,82 @@ +<tool id="eBCSgen_PCTL_parameter_synthesis" name="eBCSgen PCTL parameter synthesis" version="@TOOL_VERSION@_galaxy0"> + <description>- PCTL parameter synthesis of given parametric transition system</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="creator"/> + <requirements> + <container type="docker">sybila/ebcsgen:v@TOOL_VERSION@</container> + </requirements> + + <options sanitize="False"/> + <command>python3 ${__tool_directory__}/ebcsgen_pctl_parameter_synthesis.py + --transition_file '$transition_file' + #if len($regions) > 0: + --output '$output_regions' + #else: + --output '$output_sample' + #end if + --formula '$formula' + + #set parameters = ",".join([str($s.from) + "=" + str($s.param) + "=" + str($s.to) for $s in $regions]) + #if $parameters: + --region '$parameters' + #end if + </command> + + <inputs> + <param format="bcsl.ts" name="transition_file" type="data" label="Computed Transition system"/> + <param name="formula" type="text" label="PCTL formula"> + <validator type="empty_field"/> + </param> + + <repeat name="regions" title="Parameter intervals"> + <param name="param" value="" type="text" label="Parameter name:"> + <validator type="empty_field"/> + </param> + <param name="from" type="float" value="" label="Interval start:"/> + <param name="to" type="float" value="" label="Interval end:"/> + </repeat> + </inputs> + + <outputs> + <data format="txt" name="output_regions"> + <filter>"?" not in formula</filter> + </data> + <data format="storm.sample" name="output_sample"> + <filter>"?" in formula</filter> + </data> + </outputs> + + <tests> + <test> + <param name="transition_file" value="parametrised.bcsl.ts" ftype="bcsl.ts"/> + <param name="formula" value="P<=0.2 [F P2(active{on})::cell > 0]"/> + <repeat name="regions"> + <param name="param" value="param_sig"/> + <param name="from" value="0.1"/> + <param name="to" value="0.6"/> + </repeat> + <repeat name="regions"> + <param name="param" value="param_block"/> + <param name="from" value="0.05"/> + <param name="to" value="1.0"/> + </repeat> + <output name="output_regions" ftype="txt"> + <assert_contents> + <has_text text="Region results:"/> + </assert_contents> + </output> + </test> + <test> + <param name="transition_file" value="parametrised.bcsl.ts" ftype="bcsl.ts"/> + <param name="formula" value="P=? [F P2(active{on})::cell > 0]"/> + <output name="output_sample" ftype="storm.sample"> + <assert_contents> + <has_text text="Result (initial states):"/> + </assert_contents> + </output> + </test> + </tests> + +</tool>