<tool id="eBCSgen_PCTL_parameter_synthesis" name="eBCSgen PCTL parameter synthesis" version="@TOOL_VERSION@_galaxy0">
    <description>- PCTL parameter synthesis of given parametric transition system</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="creator"/>
    <requirements>
        <container type="docker">sybila/ebcsgen:v@TOOL_VERSION@</container>
    </requirements>

    <options sanitize="False"/>
    <command>python3 ${__tool_directory__}/ebcsgen_pctl_parameter_synthesis.py
        --transition_file '$transition_file'
        #if len($regions) > 0:
        --output '$output_regions'
        #else:
        --output '$output_sample'
        #end if
        --formula '$formula'

        #set parameters = ",".join([str($s.from) + "=" + str($s.param) + "=" + str($s.to) for $s in $regions])
        #if $parameters:
        --region '$parameters'
        #end if
    </command>

    <inputs>
        <param format="bcsl.ts" name="transition_file" type="data" label="Computed Transition system"/>
        <param name="formula" type="text" label="PCTL formula">
            <validator type="empty_field"/>
        </param>

        <repeat name="regions" title="Parameter intervals">
            <param name="param" value="" type="text" label="Parameter name:">
                <validator type="empty_field"/>
            </param>
            <param name="from" type="float" value="" label="Interval start:"/>
            <param name="to" type="float" value="" label="Interval end:"/>
        </repeat>
    </inputs>

    <outputs>
        <data format="csv" name="output_regions">
            <filter>"?" not in formula</filter>
        </data>
        <data format="storm.sample" name="output_sample">
            <filter>"?" in formula</filter>
        </data>
    </outputs>

    <tests>
        <test>
            <param name="transition_file" value="parametrised.bcsl.ts" ftype="bcsl.ts"/>
            <param name="formula" value="P&lt;=0.2 [F P2(active{on})::cell &gt; 0]"/>
            <repeat name="regions">
                <param name="param" value="param_sig"/>
                <param name="from" value="0.1"/>
                <param name="to" value="0.6"/>
            </repeat>
            <repeat name="regions">
                <param name="param" value="param_block"/>
                <param name="from" value="0.05"/>
                <param name="to" value="1.0"/>
            </repeat>
            <output name="output_regions" value="pctl_syntheisis_regions.csv" ftype="csv"/>
        </test>
        <test>
            <param name="transition_file" value="parametrised.bcsl.ts" ftype="bcsl.ts"/>
            <param name="formula" value="P=? [F P2(active{on})::cell &gt; 0]"/>
            <output name="output_sample" ftype="storm.sample">
                <assert_contents>
                    <has_text text="Result (initial states):"/>
                </assert_contents>
             </output>
        </test>
    </tests>

</tool>