Mercurial > repos > sybila > ebcsgen_sbml_export
diff ebcsgen_sbml_export.xml @ 0:2f3f67415022 draft
planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
author | sybila |
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date | Sat, 08 Oct 2022 12:55:26 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ebcsgen_sbml_export.xml Sat Oct 08 12:55:26 2022 +0000 @@ -0,0 +1,41 @@ +<tool id="eBCSgen_SBML_export" name="eBCSgen SBML export" version="@TOOL_VERSION@_galaxy0"> + <description>- export given BCSL model to SBML employing multi package</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="creator"/> + <requirements> + <container type="docker">sybila/ebcsgen:v@TOOL_VERSION@</container> + </requirements> + + <options sanitize="False"/> + <command>python3 ${__tool_directory__}/ebcsgen_sbml_export.py + --model '$model' + --output '$output' + </command> + + <inputs> + <param format="bcsl.model" name="model" type="data" label="Model file" help="Provide a BCSL model file"/> + </inputs> + + <outputs> + <data format="xml" name="output"/> + </outputs> + + <tests> + <test> + <param name="model" value="simple.bcsl.model" ftype="bcsl.model"/> + <output name="output" ftype="xml"> + <assert_contents> + <has_text text='compartment id="cell"'/> + <has_text text='name="P(S{i},T{i})::cell"'/> + <has_text text='multi:speciesType multi:id="st_T"'/> + <has_text text='speciesFeatureType multi:id="S_feature_type"'/> + <has_text text='multi:id="P_0_S"'/> + <has_n_lines n="157" delta="1"/> + </assert_contents> + </output> + </test> + </tests> + +</tool>