diff ebcsgen_sbml_export.xml @ 0:2f3f67415022 draft

planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
author sybila
date Sat, 08 Oct 2022 12:55:26 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ebcsgen_sbml_export.xml	Sat Oct 08 12:55:26 2022 +0000
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+<tool id="eBCSgen_SBML_export" name="eBCSgen SBML export" version="@TOOL_VERSION@_galaxy0">
+    <description>- export given BCSL model to SBML employing multi package</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="creator"/>
+    <requirements>
+        <container type="docker">sybila/ebcsgen:v@TOOL_VERSION@</container>
+    </requirements>
+
+    <options sanitize="False"/>
+    <command>python3 ${__tool_directory__}/ebcsgen_sbml_export.py
+        --model '$model'
+        --output '$output'
+    </command>
+
+    <inputs>
+        <param format="bcsl.model" name="model" type="data" label="Model file" help="Provide a BCSL model file"/>
+    </inputs>
+
+    <outputs>
+        <data format="xml" name="output"/>
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="model" value="simple.bcsl.model" ftype="bcsl.model"/>
+            <output name="output" ftype="xml">
+                <assert_contents>
+                    <has_text text='compartment id="cell"'/>
+                    <has_text text='name="P(S{i},T{i})::cell"'/>
+                    <has_text text='multi:speciesType multi:id="st_T"'/>
+                    <has_text text='speciesFeatureType multi:id="S_feature_type"'/>
+                    <has_text text='multi:id="P_0_S"'/>
+                    <has_n_lines n="157" delta="1"/>
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
+
+</tool>