<tool id="pithya_components" name="PITHYA components" version="@TOOL_VERSION@_galaxy0">
    <description>- computes terminal components</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="creator"/>
    <requirements>
        <container type="docker">sybila/pithya:@TOOL_VERSION@</container>
    </requirements>
    <command>pithyaComponents
        -m '$input_model'
        --parallelism '$threads'
        #if $cut_thrs
            --cut-to-range
        #end if
        --algorithm-type 'local'
        -ro '$output'
        -lo 'stdout'
    </command>

    <inputs>
        <param format="pithya.model" name="input_model" type="data" label="Pithya model file."/>
        <param type="boolean" name="cut_thrs" checked="false" label="Cut the thresholds" 
               help="...exceeding explicit minimum and maximum thresholds" />
        <param name="threads" size="2" type="integer" min="1" max="32" value="2" label="Number of threads used for parallelism." />
    </inputs>
    
    <outputs>
        <data format="pithya.result" name="output" />
    </outputs>

    <tests>
        <test>
            <param name="input_model" value="example_components.pithya.model"/>
            <output name="output">
                <assert_contents>
                    <has_text text="results"/>
                    <has_text text="variables"/>
                    <has_text text="parameters"/>
                    <has_text text="thresholds"/>
                    <has_text text="parameter_bounds"/>
                    <has_text text="states"/>
                </assert_contents>
            </output>
        </test>
    </tests>

</tool>