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planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 13d53c7fcc8541a4d3f1e19bfd607245554eedd8
author sybila
date Thu, 06 Oct 2022 09:50:39 +0000
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bc3c2b38d783 planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 13d53c7fcc8541a4d3f1e19bfd607245554eedd8
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1 <tool id="pithya_components" name="PITHYA components" version="@TOOL_VERSION@_galaxy0">
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2 <description>- computes terminal components</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="creator"/>
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7 <requirements>
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8 <container type="docker">sybila/pithya:@TOOL_VERSION@</container>
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9 </requirements>
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10 <command>pithyaComponents
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11 -m '$input_model'
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12 --parallelism '$threads'
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13 #if $cut_thrs
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14 --cut-to-range
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15 #end if
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16 --algorithm-type 'local'
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17 -ro '$output'
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18 -lo 'stdout'
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19 </command>
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20
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21 <inputs>
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22 <param format="pithya.model" name="input_model" type="data" label="Pithya model file."/>
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23 <param type="boolean" name="cut_thrs" checked="false" label="Cut the thresholds"
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24 help="...exceeding explicit minimum and maximum thresholds" />
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25 <param name="threads" size="2" type="integer" min="1" max="32" value="2" label="Number of threads used for parallelism." />
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26 </inputs>
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27
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28 <outputs>
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29 <data format="pithya.result" name="output" />
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30 </outputs>
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31
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32 <tests>
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33 <test>
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34 <param name="input_model" value="example_components.pithya.model"/>
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35 <output name="output">
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36 <assert_contents>
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37 <has_text text="results"/>
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38 <has_text text="variables"/>
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39 <has_text text="parameters"/>
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40 <has_text text="thresholds"/>
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41 <has_text text="parameter_bounds"/>
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42 <has_text text="states"/>
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43 </assert_contents>
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44 </output>
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45 </test>
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46 </tests>
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47
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48 </tool>