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comparison dnabot.xml @ 5:3d4040c7e12b draft

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planemo upload for repository https://github.com/brsynth/DNA-BOT commit 513db7f056db275f3f5d8d1337d39ff66012d89f
author tduigou
date Fri, 29 Sep 2023 09:32:13 +0000
parents 6dda0879d95a
children ec9cef4b5b5a
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4:b450154dc448 5:3d4040c7e12b
1 <tool id="dnabot" name="DNA-Bot" version="@TOOL_VERSION@" profile="21.09"> 1 <tool id="dnabot" name="DNA-Bot" version="@TOOL_VERSION@" profile="21.09" license="MIT">
2 <description>DNA assembly using BASIC on OpenTrons</description> 2 <description>DNA assembly using BASIC on OpenTrons</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">3.1.0</token> 4 <token name="@TOOL_VERSION@">4.1.0</token>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">dnabot</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">dnabot</requirement>
8 </requirements> 8 </requirements>
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
61 <!-- test 1: check if identical outputs are produced with compress option --> 61 <!-- test 1: check if identical outputs are produced with compress option -->
62 <param name="construct_file" value="constructs.csv" /> 62 <param name="construct_file" value="constructs.csv" />
63 <param name="plate_files" value="user_parts_coords.csv,linker_parts_coords.csv"/> 63 <param name="plate_files" value="user_parts_coords.csv,linker_parts_coords.csv"/>
64 <output name="dnabot_scripts" ftype="tar"> 64 <output name="dnabot_scripts" ftype="tar">
65 <assert_contents> 65 <assert_contents>
66 <has_size value="153600" delta="10000"/> 66 <has_size value="165900" delta="10000"/>
67 </assert_contents> 67 </assert_contents>
68 </output> 68 </output>
69 </test> 69 </test>
70 </tests> 70 </tests>
71 <help><![CDATA[ 71 <help><![CDATA[
97 Ouput 97 Ouput
98 ----- 98 -----
99 99
100 * **Dnabot scripts**: DNA-Bot scripts in TAR format which implement the 4 assembly steps and metainformation to keep track of parameters. 100 * **Dnabot scripts**: DNA-Bot scripts in TAR format which implement the 4 assembly steps and metainformation to keep track of parameters.
101 101
102 Version
103 -------
104
105 3.1.0
106
107 Authors 102 Authors
108 ------- 103 -------
109 104
110 * **Matthew C Haines** 105 * **Matthew C Haines**
111 * Thomas Duigou 106 * Thomas Duigou
112
113 License
114 -------
115
116 `MIT <https://github.com/BASIC-DNA-ASSEMBLY/DNA-BOT/blob/master/LICENSE>`_
117
118 107
119 Acknowledgments 108 Acknowledgments
120 --------------- 109 ---------------
121 110
122 * Marko Storch 111 * Marko Storch