Mercurial > repos > tduigou > dnabot

annotate dnabot.xml @ 5:3d4040c7e12b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/brsynth/DNA-BOT commit 513db7f056db275f3f5d8d1337d39ff66012d89f
author tduigou
date Fri, 29 Sep 2023 09:32:13 +0000
parents 6dda0879d95a
children ec9cef4b5b5a
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
3d4040c7e12b planemo upload for repository https://github.com/brsynth/DNA-BOT commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents: 3
diff changeset
1 <tool id="dnabot" name="DNA-Bot" version="@TOOL_VERSION@" profile="21.09" license="MIT">
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
2 <description>DNA assembly using BASIC on OpenTrons</description>
1
de6812daba39 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 0
diff changeset
3 <macros>
5
3d4040c7e12b planemo upload for repository https://github.com/brsynth/DNA-BOT commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents: 3
diff changeset
4 <token name="@TOOL_VERSION@">4.1.0</token>
1
de6812daba39 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 0
diff changeset
5 </macros>
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
6 <requirements>
1
de6812daba39 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 0
diff changeset
7 <requirement type="package" version="@TOOL_VERSION@">dnabot</requirement>
de6812daba39 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 0
diff changeset
8 </requirements>
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
9 <command detect_errors="exit_code"><![CDATA[
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
10 python -m dnabot.dnabot_app
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
11 #if $adv.default_settings_file
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
12 --default_settings_file '$adv.default_settings_file'
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
13 #end if
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
14 nogui
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
15 --construct_path '$construct_file'
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
16 #set files = '" "'.join([str($file) for $file in $plate_files])
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
17 --source_paths "${files}"
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
18 --etoh_well '$adv.etoh_well'
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
19 --soc_column '$adv.soc_column'
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
20 --output_dir 'output'
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
21 && tar -cvf '$dnabot_scripts' 'output'
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
22 ]]></command>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
23 <inputs>
3
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
24 <param name="construct_file" type="data" format="csv" label="Source Construct" help="CSV file listing constructs to be implemented where each row corresponds to one construct and consists of a sequence of BASIC linker and DNA part IDs (in an operon format)"/>
2
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
25 <param name="plate_files" type="data" format="csv" multiple="true" label="Plate files" help="File(s) listing parts to be used in constructs." />
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
26 <section name="adv" title="Advanced Options" expanded="false">
2
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
27 <param name="default_settings_file" type="data" format="yaml" optional="true" label="Lab settings file" help="Yaml file providing labware IDs and parameter to be used in the Opentrons scripts." />
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
28 <param argument="--etoh_well" type="select" label="Well coordinate for Ethanol" help="Coordinates of the well plate providing ethanol for the purification step.">
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
29 <option value="A2" >A2</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
30 <option value="A3" >A3</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
31 <option value="A4" >A4</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
32 <option value="A5" >A5</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
33 <option value="A6" >A6</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
34 <option value="A7" >A7</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
35 <option value="A8" >A8</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
36 <option value="A9" >A9</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
37 <option value="A10" >A10</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
38 <option value="A11" selected="true">A11</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
39 </param>
3
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
40 <param argument="--soc_column" type="select" label="Column coordinate for SOC" help="Coordinate of the column plate providing SOC (Super Optimal broth with Catabolite repression) media for the transformation step. SOC is a nutrient-rich culture media typically used for bacterial transformation.">
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
41 <option value="1" selected="true">1</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
42 <option value="2" >2</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
43 <option value="3" >3</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
44 <option value="4" >4</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
45 <option value="5" >5</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
46 <option value="6" >6</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
47 <option value="7" >7</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
48 <option value="8" >8</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
49 <option value="9" >9</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
50 <option value="10" >10</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
51 <option value="11" >11</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
52 <option value="12" >12</option>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
53 </param>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
54 </section>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
55 </inputs>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
56 <outputs>
2
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
57 <data name="dnabot_scripts" format="tar" />
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
58 </outputs>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
59 <tests>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
60 <test>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
61 <!-- test 1: check if identical outputs are produced with compress option -->
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
62 <param name="construct_file" value="constructs.csv" />
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
63 <param name="plate_files" value="user_parts_coords.csv,linker_parts_coords.csv"/>
3
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
64 <output name="dnabot_scripts" ftype="tar">
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
65 <assert_contents>
5
3d4040c7e12b planemo upload for repository https://github.com/brsynth/DNA-BOT commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents: 3
diff changeset
66 <has_size value="165900" delta="10000"/>
3
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
67 </assert_contents>
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
68 </output>
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
69 </test>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
70 </tests>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
71 <help><![CDATA[
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
72 DNA-Bot
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
73 ============
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
74
3
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
75 **DNA-Bot** tool reads the list of constructs where each row corresponds to one construct and consists of a sequence of BASIC (Biopart Assembly Standard for Idempotent Cloning) linker and DNA part IDs (in an operon format), and the DNA-parts position on the source plates. The tool generates a set of python scripts to drive an Opentrons liquid handling robot for building the plasmids using BASIC assembly method (as decribed in `Storch2015 <https://doi.org/10.1021/sb500356d>`_).
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
76
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
77 These python scripts implement the **4 assembly steps**: clip reactions, purification, assembly and strain transformation. In short, the **Clip reactions** step prepares the mixes for the ligation of the individual DNA parts with the linkers; the **Purification** step purifies the linker-ligated DNA parts using magnetic beads and the Opentrons magnetic module; the **Assembly** step mixes the DNA purified parts to build the final constructs; while the **Transformation** step transforms the chassis micro-organism with the plasmid and inoculates onto agar.
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
78
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
79 .. image:: ${static_path}/images/DNABOT_WF.PNG
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
80 :width: 90 %
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
81 :align: center
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
82
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
83 |
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
84
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
85 Optional parameters can be set by the user to define the plastic labwares to be used, and set protocol parameters such as washing or incubation times for purification step by providing a YAML settings file. Default settings: `<https://github.com/BASIC-DNA-ASSEMBLY/DNA-BOT/blob/master/dnabot/default_settings.yaml>`_
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
86
2
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
87 Inputs
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
88 ------
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
89
3
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
90 * **Source Construct**: CSV file listing constructs to be implemented where each row corresponds to one construct and consists of a sequence of BASIC linker and DNA part IDs (in an operon format).
2
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
91 * **Plate files**: File(s) listing parts to be used in constructs.
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
92 * **Well coordinate for Ethanol**: (string) Coordinates of the well plate providing ethanol for the purification step. Default: A11
3
6dda0879d95a planemo upload for repository https://github.com/brsynth/DNA-BOT commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents: 2
diff changeset
93 * **Column coordinate for SOC**: (integer) Coordinate of the column plate providing SOC (Super Optimal broth with Catabolite repression) media for the transformation step. SOC is a nutrient-rich culture media typically used for bacterial transformation. Default: 1.
2
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
94 * **Lab settings file**: Yaml file providing labware IDs and parameter to be used in the Opentrons scripts: `Default settings <https://github.com/BASIC-DNA-ASSEMBLY/DNA-BOT/blob/master/dnabot/default_settings.yaml>`_.
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
95
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
96
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
97 Ouput
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
98 -----
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
99
2
aeebb663a0d9 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 1
diff changeset
100 * **Dnabot scripts**: DNA-Bot scripts in TAR format which implement the 4 assembly steps and metainformation to keep track of parameters.
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
101
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
102 Authors
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
103 -------
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
104
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
105 * **Matthew C Haines**
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
106 * Thomas Duigou
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
107
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
108 Acknowledgments
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
109 ---------------
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
110
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
111 * Marko Storch
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
112 * Geoff Baldwin
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
113 ]]></help>
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
114 <citations>
1
de6812daba39 "planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
tduigou
parents: 0
diff changeset
115 <citation type="doi">10.1093/synbio/ysaa010</citation>
0
6d55c77a17ab "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
116 </citations>
5
3d4040c7e12b planemo upload for repository https://github.com/brsynth/DNA-BOT commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents: 3
diff changeset
117 </tool>