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view test-data/test_json.json @ 2:8cafb888ff89 draft default tip

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 7f5d8b62d749a0c41110cd9c04e0254e4fd44893-dirty
author tduigou
date Wed, 15 Oct 2025 12:33:00 +0000
parents 7eec39ef47ed
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{
    "avoid_patterns": "BsaI_site\nBsmBI_site\nBbsI_site\nSapI_site\n8x1mer\n5x3mer\n9x2mer",
    "hairpin_constraints": "stem_size=20, hairpin_window=200",
    "gc_constraints": "mini=0.3, maxi=0.7, window=100\nmini=0.1, maxi=0.9, window=100",
    "kmer_size": "15",
    "execution": "true",
    "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
    "table": "sample",
    "fragment_column": "fragment",
    "sequence_column": "sequence",
    "annotation_column": "annotation"
}